FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6494, 270 aa
  1>>>pF1KB6494 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9976+/-0.000745; mu= 12.5776+/- 0.045
 mean_var=79.6232+/-15.961, 0's: 0 Z-trim(109.7): 7  B-trim: 0 in 0/52
 Lambda= 0.143732
 statistics sampled from 11072 (11076) to 11072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS314.1 RPA2 gene_id:6118|Hs108|chr1             ( 270) 1776 377.2 6.5e-105
CCDS72740.1 RPA2 gene_id:6118|Hs108|chr1           ( 278) 1742 370.2 8.8e-103
CCDS35345.1 RPA4 gene_id:29935|Hs108|chrX          ( 261)  708 155.8 2.9e-38


>>CCDS314.1 RPA2 gene_id:6118|Hs108|chr1                  (270 aa)
 initn: 1776 init1: 1776 opt: 1776  Z-score: 1997.0  bits: 377.2 E(32554): 6.5e-105
Smith-Waterman score: 1776; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KB6 MWNSGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MWNSGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 APISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVS
              190       200       210       220       230       240

              250       260       270
pF1KB6 SIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
       ::::::::::::::::::::::::::::::
CCDS31 SIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
              250       260       270

>>CCDS72740.1 RPA2 gene_id:6118|Hs108|chr1                (278 aa)
 initn: 1742 init1: 1742 opt: 1742  Z-score: 1958.7  bits: 370.2 E(32554): 8.8e-103
Smith-Waterman score: 1742; 100.0% identity (100.0% similar) in 266 aa overlap (5-270:13-278)

                       10        20        30        40        50  
pF1KB6         MWNSGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTIS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MGRGDRNKRSIRGFESYGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTIS
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB6 QLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDD
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KB6 TSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB6 NSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NSQPSAGRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKN
              190       200       210       220       230       240

            240       250       260       270
pF1KB6 QLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
       ::::::::::::::::::::::::::::::::::::::
CCDS72 QLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
              250       260       270        

>>CCDS35345.1 RPA4 gene_id:29935|Hs108|chrX               (261 aa)
 initn: 702 init1: 315 opt: 708  Z-score: 800.3  bits: 155.8 E(32554): 2.9e-38
Smith-Waterman score: 708; 45.9% identity (72.2% similar) in 270 aa overlap (1-268:1-261)

               10          20        30        40        50        
pF1KB6 MWNSGFESYGSSSY--GGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSAT
       : .::: :::: :   :..::  :     ..:: .   .. ..: : .:::...::::.:
CCDS35 MSKSGFGSYGSISAADGASGGSDQLCERDATPAIK--TQRPKVRIQDVVPCNVNQLLSST
               10        20        30          40        50        

       60        70        80        90       100       110        
pF1KB6 LVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENT
       . : ::.. .. .:::.:::.:: :::: ..: :::::::: :...:::   . .. . :
CCDS35 VFDPVFKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVT
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KB6 VVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSA
        .   .:::: : :.   . ::: ..::  ::::::::.::::..::::.:.::  . ..
CCDS35 PLSVGVYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KB6 GRAPISNPGMSEAGNFGGNSFMPANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMS
         .:.: :  ::... : :.    : .   :..:: ::. ::. :: ....:. ::  .:
CCDS35 ESVPVS-P--SEVNDAGDNDESHRNFI---QDEVLRLIHECPHQEGKSIHELRAQLCDLS
       180          190       200          210       220       230 

      240       250       260       270
pF1KB6 VSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
       :..::.:.:.:. ::::: ::: .::::.:  
CCDS35 VKAIKEAIDYLTVEGHIYPTVDREHFKSAD  
             240       250       260   




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:34:55 2016 done: Sat Nov  5 07:34:55 2016
 Total Scan time:  2.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]