Result of FASTA (ccds) for
pF1KB6490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6490, 357 aa
1>>>pF1KB6490 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9650+/-0.000931; mu= 18.0998+/- 0.056
mean_var=62.6073+/-13.135, 0's: 0 Z-trim(104.8): 23 B-trim: 3 in 1/49
Lambda= 0.162092
statistics sampled from 8067 (8075) to 8067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.248), width: 16
Scan time: 1.760
The best scores are: opt bits E(32554)
CCDS11446.1 G6PC gene_id:2538|Hs108|chr17 ( 357) 2428 576.5 1.2e-164
CCDS2230.1 G6PC2 gene_id:57818|Hs108|chr2 ( 355) 1276 307.1 1.4e-83
CCDS59291.1 G6PC gene_id:2538|Hs108|chr17 ( 176) 811 198.2 4.4e-51
CCDS11476.1 G6PC3 gene_id:92579|Hs108|chr17 ( 346) 702 172.9 3.6e-43
CCDS46443.1 G6PC2 gene_id:57818|Hs108|chr2 ( 154) 546 136.2 1.8e-32
>>CCDS11446.1 G6PC gene_id:2538|Hs108|chr17 (357 aa)
initn: 2428 init1: 2428 opt: 2428 Z-score: 3069.7 bits: 576.5 E(32554): 1.2e-164
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)
10 20 30 40 50 60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 VVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
310 320 330 340 350
>>CCDS2230.1 G6PC2 gene_id:57818|Hs108|chr2 (355 aa)
initn: 1287 init1: 755 opt: 1276 Z-score: 1613.8 bits: 307.1 E(32554): 1.4e-83
Smith-Waterman score: 1276; 50.8% identity (77.7% similar) in 354 aa overlap (5-356:1-354)
10 20 30 40 50 60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
:. :: :. ..:: .:. .. ..: ..: :: :.. ::. :.....:: :
CCDS22 MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTK
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
..:::::::::::.:::::::.:::::: .:. : : : : ..:::.:::::::::::::
CCDS22 MIWVAVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHA
60 70 80 90 100 110
130 140 150 160 170
pF1KB6 MGTAGVYYVMVTSTLS-IFQGKIKPTYRFRCLN-VILWLGFWAVQLNVCLSRIYLAAHFP
::.. :.:::::..:: : : . .. :. .:: :: .:..::.::...:.:::
CCDS22 MGASCVWYVMVTAALSHTVCGMDKFSITLHRLTWSFLWSVFWLIQISVCISRVFIATHFP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 HQVVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTL
:::. ::..:. :::.: : .: .::: :. ..::: ::.::::::. :..::::..
CCDS22 HQVILGVIGGMLVAEAFEHTPGIQTASLGTYLKTNLFLFLFAVGFYLLLRVLNIDLLWSV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 EKAQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSS
:..:: .:.:.::::::::.:..:::.:::::.:.:: :. ::.: . : :::
CCDS22 PIAKKWCANPDWIHIDTTPFAGLVRNLGVLFGLGFAINSEMFLLSCRGGNNYTLSFRLLC
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB6 IVASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
..::..:... :. :.. : .:::::::::: .::. :. ::: . ... : :::
CCDS22 ALTSLTILQLYHFLQIPTHEEHLFYVLSFCKSASIPLTVVAFIPYSVHMLMKQSGKKSQ
300 310 320 330 340 350
>>CCDS59291.1 G6PC gene_id:2538|Hs108|chr17 (176 aa)
initn: 829 init1: 811 opt: 811 Z-score: 1030.5 bits: 198.2 E(32554): 4.4e-51
Smith-Waterman score: 811; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)
10 20 30 40 50 60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGKDKADL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
CCDS59 QISVLECHFVVGILGCAAECLSVTNLPCCSFSSSSCCWSPVRHCCCRNFQPHPQHL
130 140 150 160 170
>>CCDS11476.1 G6PC3 gene_id:92579|Hs108|chr17 (346 aa)
initn: 669 init1: 248 opt: 702 Z-score: 888.5 bits: 172.9 E(32554): 3.6e-43
Smith-Waterman score: 738; 35.3% identity (66.8% similar) in 340 aa overlap (12-351:8-338)
10 20 30 40 50 60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
:: .. :: . .. .. .. ..: . : :: .. .. :::
CCDS11 MESTLGAGIVIAEALQNQLAWLENVWLWITFLGDPKILFLFYFPAAYYASRRVGIA
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
.::...: .::::.:::.:::.::.::: .. :::.. . ..::: .:::::::::::
CCDS11 VLWISLITEWLNLIFKWFLFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
: :... . ..:. ..... : : . :. :.. . : : ::::.. ::::::
CCDS11 MITGAALWPIMTA----LSSQVATRARSRWVRVMPSLAYCTFLLAVGLSRIFILAHFPHQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 VVAGVLSGIAVAETFSHIHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEK
:.::...: :: . . .. :. : : .. :. . .: : ::.:: :..
CCDS11 VLAGLITG-AVLGWLMTPRVPMERELSFYGLTALALMLGTSLIYWTLFTLGLDLSWSISL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 AQRWCEQPEWVHIDTTPFASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIV
: .:::.:::.:.:. ::::: .. :. .:::.::.: : . ...:.. ... .:
CCDS11 AFKWCERPEWIHVDSRPFASLSRDSGAALGLGIALHSPCYAQVRRAQLGNGQ--KIACLV
240 250 260 270 280
310 320 330 340 350
pF1KB6 ASLVLLHVFDSLKPPSQVELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL
.. :: .: : : :. : ::...: : .. : ....:. . . .:
CCDS11 LAMGLLGPLDWLGHPPQISL-FYIFNFLKYTLWPCLVLALVPWAVHMFSAQEAPPIHSS
290 300 310 320 330 340
>>CCDS46443.1 G6PC2 gene_id:57818|Hs108|chr2 (154 aa)
initn: 546 init1: 546 opt: 546 Z-score: 696.4 bits: 136.2 E(32554): 1.8e-32
Smith-Waterman score: 546; 55.3% identity (81.1% similar) in 132 aa overlap (5-136:1-132)
10 20 30 40 50 60
pF1KB6 MEEGMNVLHDFGIQSTHYLQVNYQDSQDWFILVSVIADLRNAFYVLFPIWFHLQEAVGIK
:. :: :. ..:: .:. .. ..: ..: :: :.. ::. :.....:: :
CCDS46 MDFLHRNGVLIIQHLQKDYRAYYTFLNFMSNVGDPRNIFFIYFPLCFQFNQTVGTK
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LLWVAVIGDWLNLVFKWILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHA
..:::::::::::.:::::::.:::::: .:. : : : : ..:::.:::::::::::::
CCDS46 MIWVAVIGDWLNLIFKWILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 MGTAGVYYVMVTSTLSIFQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQ
::.. :.:::::..::
CCDS46 MGASCVWYVMVTAALSHTVCGMDKFSITLHRHAGGRGL
120 130 140 150
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:09:04 2016 done: Fri Nov 4 23:09:04 2016
Total Scan time: 1.760 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]