Result of FASTA (ccds) for
pF1KB6480
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6480, 337 aa
1>>>pF1KB6480 337 - 337 aa - 337 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2433+/-0.000696; mu= 17.0593+/- 0.042
mean_var=68.1244+/-13.493, 0's: 0 Z-trim(110.0): 24 B-trim: 5 in 1/50
Lambda= 0.155390
statistics sampled from 11245 (11265) to 11245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.346), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21 ( 337) 2277 518.9 2.2e-147
CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21 ( 356) 2130 486.0 1.9e-137
CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21 ( 325) 306 77.1 2.2e-14
>>CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21 (337 aa)
initn: 2277 init1: 2277 opt: 2277 Z-score: 2759.4 bits: 518.9 E(32554): 2.2e-147
Smith-Waterman score: 2277; 100.0% identity (100.0% similar) in 337 aa overlap (1-337:1-337)
10 20 30 40 50 60
pF1KB6 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSPFDIADTSTAFFCYYVHYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSPFDIADTSTAFFCYYVHYW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYETMAD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEEYLKDPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEEYLKDPTQ
250 260 270 280 290 300
310 320 330
pF1KB6 PILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
:::::::::::::::::::::::::::::::::::::
CCDS33 PILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
310 320 330
>>CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21 (356 aa)
initn: 2130 init1: 2130 opt: 2130 Z-score: 2580.9 bits: 486.0 E(32554): 1.9e-137
Smith-Waterman score: 2229; 94.7% identity (94.7% similar) in 356 aa overlap (1-337:1-356)
10 20 30 40
pF1KB6 MRPTLLWSLLLLLGVFAAAAAAPP-------------------DPLSQLPAPQHPKIRLY
:::::::::::::::::::::::: :::::::::::::::::
CCDS82 MRPTLLWSLLLLLGVFAAAAAAPPAQLTLETYQEWCNDSAATHDPLSQLPAPQHPKIRLY
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 NAEQVLSWEPVALSNSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NAEQVLSWEPVALSNSTRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 SAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB6 PFDIADTSTAFFCYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PFDIADTSTAFFCYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB6 NIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWF
250 260 270 280 290 300
290 300 310 320 330
pF1KB6 HTPPSIPLQIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HTPPSIPLQIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
310 320 330 340 350
>>CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21 (325 aa)
initn: 158 init1: 73 opt: 306 Z-score: 371.6 bits: 77.1 E(32554): 2.2e-14
Smith-Waterman score: 335; 25.7% identity (56.0% similar) in 327 aa overlap (5-324:1-299)
10 20 30 40 50 60
pF1KB6 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
. ::: :: ..: :...: :.. .. : ...:.:: :.....
CCDS13 MAWSLGSWLGGCLLVSA-----LGMVPPPENVRMNSVNFKNILQWESPAFAKGN--
10 20 30 40
70 80 90 100 110 120
pF1KB6 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
... .: : . . : .: . : :::::.. : . :::.:::..
CCDS13 LTFTAQ--YLSYRIFQD-------KCMNTTLTECDFSSLSKYGDH------TLRVRAEFA
50 60 70 80 90
130 140 150 160 170
pF1KB6 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSP-----FDIADTSTAF--F
:: ::.. : .. .::: ...: :: .:: .: .. .... .
CCDS13 DEHSDWVNIT-FCPVDDTIIGPP-GMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSW
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 CYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNIS
: :.::..: .. . . . : ::.: .::.::.. .: ... ..:. :.
CCDS13 TYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG-FLPDRN---KAGEWSEPV
160 170 180 190 200
240 250 260 270 280 290
pF1KB6 CYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEE
: .: : .. .: .: ... .. . .:: :. :: : :.: ...:
CCDS13 CEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE
210 220 230 240 250 260
300 310 320 330
pF1KB6 YLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL
.: : . : .. : ..::.:..:.:.
CCDS13 FLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS
270 280 290 300 310 320
337 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:15:27 2016 done: Sat Nov 5 01:15:28 2016
Total Scan time: 2.820 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]