Result of FASTA (omim) for
pF1KB6477
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6477, 326 aa
1>>>pF1KB6477 326 - 326 aa - 326 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5787+/-0.000331; mu= 6.6963+/- 0.021
mean_var=158.5098+/-31.226, 0's: 0 Z-trim(120.0): 38 B-trim: 51 in 1/54
Lambda= 0.101870
statistics sampled from 34595 (34637) to 34595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.406), width: 16
Scan time: 7.730
The best scores are: opt bits E(85289)
NP_067038 (OMIM: 614694) regulation of nuclear pre ( 326) 2082 317.4 2.6e-86
XP_005260534 (OMIM: 614694) PREDICTED: regulation ( 285) 1770 271.5 1.5e-72
XP_016883479 (OMIM: 614694) PREDICTED: regulation ( 323) 1770 271.5 1.6e-72
XP_011527256 (OMIM: 614694) PREDICTED: regulation ( 323) 1770 271.5 1.6e-72
XP_005260537 (OMIM: 614694) PREDICTED: regulation ( 193) 1176 184.1 2.1e-46
XP_016883480 (OMIM: 614694) PREDICTED: regulation ( 218) 1176 184.1 2.3e-46
XP_011524351 (OMIM: 610347) PREDICTED: regulation ( 276) 729 118.5 1.7e-26
XP_011524352 (OMIM: 610347) PREDICTED: regulation ( 276) 729 118.5 1.7e-26
NP_001290340 (OMIM: 610347) regulation of nuclear ( 276) 729 118.5 1.7e-26
NP_001290341 (OMIM: 610347) regulation of nuclear ( 276) 729 118.5 1.7e-26
XP_011524350 (OMIM: 610347) PREDICTED: regulation ( 312) 680 111.3 2.7e-24
NP_060640 (OMIM: 610347) regulation of nuclear pre ( 312) 680 111.3 2.7e-24
NP_001290342 (OMIM: 610347) regulation of nuclear ( 289) 668 109.5 8.5e-24
XP_016881297 (OMIM: 610347) PREDICTED: regulation ( 253) 511 86.4 6.8e-17
XP_005245090 (OMIM: 614695) PREDICTED: regulation ( 706) 373 66.5 1.9e-10
XP_016856254 (OMIM: 614695) PREDICTED: regulation ( 893) 373 66.6 2.3e-10
XP_006711303 (OMIM: 614695) PREDICTED: regulation ( 960) 373 66.6 2.4e-10
XP_011507646 (OMIM: 614695) PREDICTED: regulation (1394) 373 66.7 3.2e-10
NP_056018 (OMIM: 614695) regulation of nuclear pre (1461) 373 66.7 3.4e-10
XP_016856256 (OMIM: 614695) PREDICTED: regulation ( 613) 308 56.9 1.3e-07
XP_016856255 (OMIM: 614695) PREDICTED: regulation ( 680) 308 56.9 1.4e-07
NP_001284602 (OMIM: 614695) regulation of nuclear ( 934) 308 57.0 1.8e-07
XP_016856252 (OMIM: 614695) PREDICTED: regulation (1368) 308 57.1 2.4e-07
NP_001284603 (OMIM: 614695) regulation of nuclear (1435) 308 57.2 2.5e-07
>>NP_067038 (OMIM: 614694) regulation of nuclear pre-mRN (326 aa)
initn: 2082 init1: 2082 opt: 2082 Z-score: 1670.6 bits: 317.4 E(85289): 2.6e-86
Smith-Waterman score: 2082; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)
10 20 30 40 50 60
pF1KB6 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL
250 260 270 280 290 300
310 320
pF1KB6 PDLSLLPNVTGGLAPLPSAGDLFSTD
::::::::::::::::::::::::::
NP_067 PDLSLLPNVTGGLAPLPSAGDLFSTD
310 320
>>XP_005260534 (OMIM: 614694) PREDICTED: regulation of n (285 aa)
initn: 1770 init1: 1770 opt: 1770 Z-score: 1423.6 bits: 271.5 E(85289): 1.5e-72
Smith-Waterman score: 1770; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL
:::::::::::::::::::::::::::::::::::::
XP_005 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEGVMIDFGL
250 260 270 280
310 320
pF1KB6 PDLSLLPNVTGGLAPLPSAGDLFSTD
>>XP_016883479 (OMIM: 614694) PREDICTED: regulation of n (323 aa)
initn: 1770 init1: 1770 opt: 1770 Z-score: 1422.8 bits: 271.5 E(85289): 1.6e-72
Smith-Waterman score: 1770; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL
:::::::::::::::::::::::::::::::::::::
XP_016 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEIWLIHSAHVLGAYCLLDTAEPGG
250 260 270 280 290 300
310 320
pF1KB6 PDLSLLPNVTGGLAPLPSAGDLFSTD
XP_016 CWGKQMGLVLASRSLLVKCGSHC
310 320
>>XP_011527256 (OMIM: 614694) PREDICTED: regulation of n (323 aa)
initn: 1770 init1: 1770 opt: 1770 Z-score: 1422.8 bits: 271.5 E(85289): 1.6e-72
Smith-Waterman score: 1770; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL
:::::::::::::::::::::::::::::::::::::
XP_011 NGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEIWLIHSAHVLGAYCLLDTAEPGG
250 260 270 280 290 300
310 320
pF1KB6 PDLSLLPNVTGGLAPLPSAGDLFSTD
XP_011 CWGKQMGLVLASRSLLVKCGSHC
310 320
>>XP_005260537 (OMIM: 614694) PREDICTED: regulation of n (193 aa)
initn: 1176 init1: 1176 opt: 1176 Z-score: 954.1 bits: 184.1 E(85289): 2.1e-46
Smith-Waterman score: 1176; 100.0% identity (100.0% similar) in 188 aa overlap (139-326:6-193)
110 120 130 140 150 160
pF1KB6 NIWQERSVYGGEFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQ
::::::::::::::::::::::::::::::
XP_005 MIMNDATEEKKSLKRTFQQIQEEEDDDYPGSYSPQ
10 20 30
170 180 190 200 210 220
pF1KB6 DPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSK
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB6 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ
100 110 120 130 140 150
290 300 310 320
pF1KB6 VRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD
::::::::::::::::::::::::::::::::::::::
XP_005 VRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD
160 170 180 190
>>XP_016883480 (OMIM: 614694) PREDICTED: regulation of n (218 aa)
initn: 1197 init1: 1176 opt: 1176 Z-score: 953.4 bits: 184.1 E(85289): 2.3e-46
Smith-Waterman score: 1176; 100.0% identity (100.0% similar) in 188 aa overlap (139-326:31-218)
110 120 130 140 150 160
pF1KB6 NIWQERSVYGGEFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQ
::::::::::::::::::::::::::::::
XP_016 MMSSKTVKGKDLNSLENLNLSLWMLFLMLPATEEKKSLKRTFQQIQEEEDDDYPGSYSPQ
10 20 30 40 50 60
170 180 190 200 210 220
pF1KB6 DPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSK
70 80 90 100 110 120
230 240 250 260 270 280
pF1KB6 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQ
130 140 150 160 170 180
290 300 310 320
pF1KB6 VRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD
::::::::::::::::::::::::::::::::::::::
XP_016 VRKELKSHIQSLPDLSLLPNVTGGLAPLPSAGDLFSTD
190 200 210
>>XP_011524351 (OMIM: 610347) PREDICTED: regulation of n (276 aa)
initn: 1078 init1: 657 opt: 729 Z-score: 596.9 bits: 118.5 E(85289): 1.7e-26
Smith-Waterman score: 1053; 61.2% identity (84.1% similar) in 276 aa overlap (51-326:15-276)
30 40 50 60 70 80
pF1KB6 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE
.: :::::::::::::::::::::::::..
XP_011 MRNSNWRFCQTGIYSKPNRKLTFLYLANDVIQNSKRKGPEFTKD
10 20 30 40
90 100 110 120 130 140
pF1KB6 FESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKAT
: :.:.::.::. :.::.::: : :.:.::.::::: .. ..::: .. .:.:
XP_011 FAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPR----
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB6 EEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQK
:::..::. .:... . ::..: : : .:..:::::::::::::.:.:.
XP_011 ------KRTYEQIKVDENENCSSLGSPSEP---PQ-TLDLVRALQDLENAASGDAAVHQR
110 120 130 140 150
210 220 230 240 250 260
pF1KB6 IASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVE
::::: :::.::::.::::::..::::: :..::.:::.::::::::..::.::.:::..
XP_011 IASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLAD
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 YTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAG
. . ::..:.:::.::::::.:::::. :::::.:.:::::::: ::::::. :: ::
XP_011 FLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAG
220 230 240 250 260 270
pF1KB6 DLFSTD
:..: :
XP_011 DIYSED
>>XP_011524352 (OMIM: 610347) PREDICTED: regulation of n (276 aa)
initn: 1078 init1: 657 opt: 729 Z-score: 596.9 bits: 118.5 E(85289): 1.7e-26
Smith-Waterman score: 1053; 61.2% identity (84.1% similar) in 276 aa overlap (51-326:15-276)
30 40 50 60 70 80
pF1KB6 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE
.: :::::::::::::::::::::::::..
XP_011 MRNSNWRFCQTGIYSKPNRKLTFLYLANDVIQNSKRKGPEFTKD
10 20 30 40
90 100 110 120 130 140
pF1KB6 FESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKAT
: :.:.::.::. :.::.::: : :.:.::.::::: .. ..::: .. .:.:
XP_011 FAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPR----
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB6 EEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQK
:::..::. .:... . ::..: : : .:..:::::::::::::.:.:.
XP_011 ------KRTYEQIKVDENENCSSLGSPSEP---PQ-TLDLVRALQDLENAASGDAAVHQR
110 120 130 140 150
210 220 230 240 250 260
pF1KB6 IASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVE
::::: :::.::::.::::::..::::: :..::.:::.::::::::..::.::.:::..
XP_011 IASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLAD
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 YTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAG
. . ::..:.:::.::::::.:::::. :::::.:.:::::::: ::::::. :: ::
XP_011 FLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAG
220 230 240 250 260 270
pF1KB6 DLFSTD
:..: :
XP_011 DIYSED
>>NP_001290340 (OMIM: 610347) regulation of nuclear pre- (276 aa)
initn: 1078 init1: 657 opt: 729 Z-score: 596.9 bits: 118.5 E(85289): 1.7e-26
Smith-Waterman score: 1053; 61.2% identity (84.1% similar) in 276 aa overlap (51-326:15-276)
30 40 50 60 70 80
pF1KB6 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE
.: :::::::::::::::::::::::::..
NP_001 MRNSNWRFCQTGIYSKPNRKLTFLYLANDVIQNSKRKGPEFTKD
10 20 30 40
90 100 110 120 130 140
pF1KB6 FESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKAT
: :.:.::.::. :.::.::: : :.:.::.::::: .. ..::: .. .:.:
NP_001 FAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPR----
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB6 EEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQK
:::..::. .:... . ::..: : : .:..:::::::::::::.:.:.
NP_001 ------KRTYEQIKVDENENCSSLGSPSEP---PQ-TLDLVRALQDLENAASGDAAVHQR
110 120 130 140 150
210 220 230 240 250 260
pF1KB6 IASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVE
::::: :::.::::.::::::..::::: :..::.:::.::::::::..::.::.:::..
NP_001 IASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLAD
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 YTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAG
. . ::..:.:::.::::::.:::::. :::::.:.:::::::: ::::::. :: ::
NP_001 FLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAG
220 230 240 250 260 270
pF1KB6 DLFSTD
:..: :
NP_001 DIYSED
>>NP_001290341 (OMIM: 610347) regulation of nuclear pre- (276 aa)
initn: 1078 init1: 657 opt: 729 Z-score: 596.9 bits: 118.5 E(85289): 1.7e-26
Smith-Waterman score: 1053; 61.2% identity (84.1% similar) in 276 aa overlap (51-326:15-276)
30 40 50 60 70 80
pF1KB6 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE
.: :::::::::::::::::::::::::..
NP_001 MRNSNWRFCQTGIYSKPNRKLTFLYLANDVIQNSKRKGPEFTKD
10 20 30 40
90 100 110 120 130 140
pF1KB6 FESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKAT
: :.:.::.::. :.::.::: : :.:.::.::::: .. ..::: .. .:.:
NP_001 FAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPR----
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB6 EEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQK
:::..::. .:... . ::..: : : .:..:::::::::::::.:.:.
NP_001 ------KRTYEQIKVDENENCSSLGSPSEP---PQ-TLDLVRALQDLENAASGDAAVHQR
110 120 130 140 150
210 220 230 240 250 260
pF1KB6 IASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVE
::::: :::.::::.::::::..::::: :..::.:::.::::::::..::.::.:::..
NP_001 IASLPVEVQEVSLLDKITDKESGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLAD
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB6 YTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAPLPSAG
. . ::..:.:::.::::::.:::::. :::::.:.:::::::: ::::::. :: ::
NP_001 FLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRIQSLPDLSRLPNVTGSHMHLPFAG
220 230 240 250 260 270
pF1KB6 DLFSTD
:..: :
NP_001 DIYSED
326 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:59:15 2016 done: Fri Nov 4 20:59:16 2016
Total Scan time: 7.730 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]