FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6469, 324 aa
  1>>>pF1KB6469 324 - 324 aa - 324 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5646+/-0.00104; mu= 5.7017+/- 0.063
 mean_var=128.6294+/-24.444, 0's: 0 Z-trim(107.3): 18  B-trim: 0 in 0/50
 Lambda= 0.113085
 statistics sampled from 9475 (9483) to 9475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.291), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS10910.1 PSMD7 gene_id:5713|Hs108|chr16         ( 324) 2098 353.5 1.3e-97
CCDS7785.1 EIF3F gene_id:8665|Hs108|chr11          ( 357)  404 77.2 2.2e-14
CCDS5682.1 COPS6 gene_id:10980|Hs108|chr7          ( 327)  366 70.9 1.5e-12


>>CCDS10910.1 PSMD7 gene_id:5713|Hs108|chr16              (324 aa)
 initn: 2098 init1: 2098 opt: 2098  Z-score: 1865.9  bits: 353.5 E(32554): 1.3e-97
Smith-Waterman score: 2098; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KB6 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQEKEESKKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQEKEESKKDR
              250       260       270       280       290       300

              310       320    
pF1KB6 KEDKEKDKDKEKSDVKKEEKKEKK
       ::::::::::::::::::::::::
CCDS10 KEDKEKDKDKEKSDVKKEEKKEKK
              310       320    

>>CCDS7785.1 EIF3F gene_id:8665|Hs108|chr11               (357 aa)
 initn: 371 init1: 187 opt: 404  Z-score: 371.6  bits: 77.2 E(32554): 2.2e-14
Smith-Waterman score: 404; 29.0% identity (64.7% similar) in 272 aa overlap (9-277:92-356)

                                     10        20        30        
pF1KB6                       MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGV
                                     : .::..: :.:: ..: ..  .  ::.:.
CCDS77 TPASAQAPAQTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNE--GAARVIGT
              70        80        90       100       110           

       40        50        60        70        80        90        
pF1KB6 LLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTG
       :::. .:. ..:.: :.:: .:.. . .:   : .. .::: . :::.  : :.::: ::
CCDS77 LLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATG
     120       130       140          150       160       170      

      100       110       120       130       140       150        
pF1KB6 PKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHV
         . .... :.: ..:  :: . . .:.. ..  .  .::.:.  .   :   .  :  .
CCDS77 HDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTL-MGVPGRTMGVMFTPL
        180       190       200       210       220        230     

      160       170        180       190       200        210      
pF1KB6 TSEIGAEEAEEVGVEHLLRD-IKDTTVGTLSQRITNQVHGLKG-LNSKLLDIRSYLEKVA
       : . .  ..:..::. ...  .. . :  ::. . .:: : .. ... :  . .: : : 
CCDS77 TVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDL-QQVGGASARIQDALSTVLQYAEDVL
         240       250       260        270       280       290    

        220       230       240       250       260       270      
pF1KB6 TGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHN-L
       .::.  .. .   :... : .: .  ..:   .  . :: ..:.:::.: .: .::.. :
CCDS77 SGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL
          300       310       320       330       340       350    

         280       290       300       310       320    
pF1KB6 INNKIANRDAEKKEGQEKEESKKDRKEDKEKDKDKEKSDVKKEEKKEKK
       .:                                               
CCDS77 VNL                                              
                                                        

>>CCDS5682.1 COPS6 gene_id:10980|Hs108|chr7               (327 aa)
 initn: 277 init1: 182 opt: 366  Z-score: 338.7  bits: 70.9 E(32554): 1.5e-12
Smith-Waterman score: 366; 26.4% identity (63.7% similar) in 273 aa overlap (9-277:41-307)

                                     10        20         30       
pF1KB6                       MPELAVQKVVVHPLVLLSVVDHFNRI-GKVGNQKRVVG
                                     :..::::.:.. ::. :. .. :   .:.:
CCDS56 TNGTGGSSGMEVDAAVVPSVMACGVTGSVSVALHPLVILNISDHWIRMRSQEGRPVQVIG
               20        30        40        50        60        70

        40        50        60        70        80        90       
pF1KB6 VLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHT
       .:.:. . . ..: ::: . ...  ..  .  .:..:  .   .::.:  . ...::: :
CCDS56 ALIGKQEGRNIEVMNSFEL-LSHTVEEKII--IDKEYYYTKEEQFKQVFKELEFLGWYTT
               80         90         100       110       120       

       100       110       120       130       140       150       
pF1KB6 GPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEH
       :     .:: ... . .   . ... ..   :   ::. .. :: .. . :  :   : .
CCDS56 GGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFESVIDIIN-GEATM-LFAE
       130       140       150       160       170        180      

       160       170       180          190       200       210    
pF1KB6 VTSEIGAEEAEEVGVEHLLRDIKDTTVG---TLSQRITNQVHGLKGLNSKLLDIRSYLEK
       .:  ...::::..::.:. : .  :  :   :.....  :  ..: :.:..  :  :.. 
CCDS56 LTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYVKA
         190       200        210       220       230       240    

          220       230       240       250       260       270    
pF1KB6 VATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHN
         .:..:.::.:. .   . . :: .: ..:   :: . ::  ...::... ..  ....
CCDS56 SEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQ
          250       260       270       280       290       300    

          280       290       300       310       320    
pF1KB6 LINNKIANRDAEKKEGQEKEESKKDRKEDKEKDKDKEKSDVKKEEKKEKK
       ..:                                               
CCDS56 FVNKFNVLYDRQGIGRRMRGLFF                           
          310       320                                  




324 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:34:02 2016 done: Fri Nov  4 16:34:02 2016
 Total Scan time:  2.590 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]