FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6466, 352 aa
  1>>>pF1KB6466 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0353+/-0.000777; mu= 10.4401+/- 0.047
 mean_var=130.3315+/-26.284, 0's: 0 Z-trim(112.7): 37  B-trim: 5 in 1/52
 Lambda= 0.112344
 statistics sampled from 13390 (13426) to 13390 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.412), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS9247.1 KMT5A gene_id:387893|Hs108|chr12        ( 352) 2348 391.2 6.9e-109


>>CCDS9247.1 KMT5A gene_id:387893|Hs108|chr12             (352 aa)
 initn: 2348 init1: 2348 opt: 2348  Z-score: 2068.3  bits: 391.2 E(32554): 6.9e-109
Smith-Waterman score: 2348; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB6 MARGRKMSKPRAVEAAAAAAAVAATAPGPEMVERRGPGRPRTDGENVFTGQSKIYSYMSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MARGRKMSKPRAVEAAAAAAAVAATAPGPEMVERRGPGRPRTDGENVFTGQSKIYSYMSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NKCSGMRFPLQEENSVTHHEVKCQGKPLAGIYRKREEKRNAGNAVRSAMKSEEQKIKDAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 NKCSGMRFPLQEENSVTHHEVKCQGKPLAGIYRKREEKRNAGNAVRSAMKSEEQKIKDAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KGPLVPFPNQKSEAAEPPKTPPSSCDSTNAAIAKQALKKPIKGKQAPRKKAQGKTQQNRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KGPLVPFPNQKSEAAEPPKTPPSSCDSTNAAIAKQALKKPIKGKQAPRKKAQGKTQQNRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LTDFYPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LTDFYPVRRSSRKSKAELQSEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 FVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 FVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKTYCVDATRETNRLGRLINHS
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB6 KCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAHPWLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAHPWLKH
              310       320       330       340       350  




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:06:04 2016 done: Sat Nov  5 01:06:04 2016
 Total Scan time:  2.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]