FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6465, 322 aa
  1>>>pF1KB6465 322 - 322 aa - 322 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6056+/-0.00122; mu= 4.2305+/- 0.070
 mean_var=250.2235+/-59.864, 0's: 0 Z-trim(107.2): 251  B-trim: 590 in 1/50
 Lambda= 0.081079
 statistics sampled from 9079 (9407) to 9079 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.289), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS6063.1 PBK gene_id:55872|Hs108|chr8            ( 322) 2149 265.0 5.6e-71
CCDS64858.1 PBK gene_id:55872|Hs108|chr8           ( 333) 1312 167.1 1.7e-41


>>CCDS6063.1 PBK gene_id:55872|Hs108|chr8                 (322 aa)
 initn: 2149 init1: 2149 opt: 2149  Z-score: 1387.8  bits: 265.0 E(32554): 5.6e-71
Smith-Waterman score: 2149; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDESYQKVIELFSVC
              250       260       270       280       290       300

              310       320  
pF1KB6 TNEDPKDRPSAAHIVEALETDV
       ::::::::::::::::::::::
CCDS60 TNEDPKDRPSAAHIVEALETDV
              310       320  

>>CCDS64858.1 PBK gene_id:55872|Hs108|chr8                (333 aa)
 initn: 1312 init1: 1312 opt: 1312  Z-score: 858.5  bits: 167.1 E(32554): 1.7e-41
Smith-Waterman score: 2117; 96.7% identity (96.7% similar) in 333 aa overlap (1-322:1-333)

               10        20        30        40        50        60
pF1KB6 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 WAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFE
              130       140       150       160       170       180

              190                  200       210       220         
pF1KB6 TIKICDVGVSLPLDENMT-----------VTDPEACYIGTEPWKPKEAVEENGVITDKAD
       ::::::::::::::::::           :::::::::::::::::::::::::::::::
CCDS64 TIKICDVGVSLPLDENMTAPAFITILLVSVTDPEACYIGTEPWKPKEAVEENGVITDKAD
              190       200       210       220       230       240

     230       240       250       260       270       280         
pF1KB6 IFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPPINMEELDES
              250       260       270       280       290       300

     290       300       310       320  
pF1KB6 YQKVIELFSVCTNEDPKDRPSAAHIVEALETDV
       :::::::::::::::::::::::::::::::::
CCDS64 YQKVIELFSVCTNEDPKDRPSAAHIVEALETDV
              310       320       330   




322 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:00:49 2016 done: Sat Nov  5 08:00:49 2016
 Total Scan time:  2.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]