FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6464, 352 aa
  1>>>pF1KB6464 352 - 352 aa - 352 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1711+/-0.000761; mu= 17.2597+/- 0.046
 mean_var=70.6783+/-13.622, 0's: 0 Z-trim(109.0): 45  B-trim: 0 in 0/51
 Lambda= 0.152557
 statistics sampled from 10531 (10576) to 10531 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.325), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS6800.1 AMBP gene_id:259|Hs108|chr9             ( 352) 2437 545.3 2.9e-155
CCDS82159.1 WFIKKN2 gene_id:124857|Hs108|chr17     ( 483)  345 84.9 1.5e-16
CCDS11575.1 WFIKKN2 gene_id:124857|Hs108|chr17     ( 576)  345 85.0 1.7e-16
CCDS10414.1 WFIKKN1 gene_id:117166|Hs108|chr16     ( 548)  290 72.9 7.3e-13
CCDS7019.1 PTGDS gene_id:5730|Hs108|chr9           ( 190)  261 66.2 2.6e-11


>>CCDS6800.1 AMBP gene_id:259|Hs108|chr9                  (352 aa)
 initn: 2437 init1: 2437 opt: 2437  Z-score: 2900.9  bits: 545.3 E(32554): 2.9e-155
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB6 MRSLGALLLLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MRSLGALLLLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 YVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGPC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 MGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTCRTVAACNLPIVRGPCRAFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTCRTVAACNLPIVRGPCRAFI
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB6 QLWAFDAVKGKCVLFPYGGCQGNGNKFYSEKECREYCGVPGDGDEELLRFSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QLWAFDAVKGKCVLFPYGGCQGNGNKFYSEKECREYCGVPGDGDEELLRFSN
              310       320       330       340       350  

>>CCDS82159.1 WFIKKN2 gene_id:124857|Hs108|chr17          (483 aa)
 initn: 401 init1: 241 opt: 345  Z-score: 410.6  bits: 84.9 E(32554): 1.5e-16
Smith-Waterman score: 345; 31.5% identity (59.6% similar) in 178 aa overlap (166-340:178-346)

         140       150       160       170       180       190     
pF1KB6 KKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIFTMADRGECVPGEQEP
                                     ..:  .. . . .:.: . :.  : :  . 
CCDS82 ITWEKQLEDRENVVMRPNHVRGNVVVTNIAQLVIYNAQLQDAGIYTCTARN--VAGVLRA
       150       160       170       180       190         200     

          200       210       220       230       240       250    
pF1KB6 E-PILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGPCMGMTSRYFYNGTSM
       . :. . : ..:.  .:   .: .  ..:  :  :: .       :    .:. ... . 
CCDS82 DFPLSVVRGHQAAATSESSPNGTAFPAAECLKPPDSED-------CGEEQTRWHFDAQAN
         210       220       230       240              250        

          260       270       280         290       300       310  
pF1KB6 ACETFQYGGCMGNGNNFVTEKECLQTCRT--VAACNLPIVRGPCRAFIQLWAFDAVKGKC
        : :: .: :  : :.: : . :. .: .  .:::.:: ..:::.:.   ::...  :.:
CCDS82 NCLTFTFGHCHRNLNHFETYEACMLACMSGPLAACSLPALQGPCKAYAPRWAYNSQTGQC
      260       270       280       290       300       310        

            320       330       340       350                      
pF1KB6 VLFPYGGCQGNGNKFYSEKECREYCGVPGDGDEELLRFSN                    
         : ::::.::::.: :.. :.: :  :                                
CCDS82 QSFVYGGCEGNGNNFESREACEESCPFPRGNQRCRACKPRQKLVTSFCRSDFVILGRVSE
      320       330       340       350       360       370        

>>CCDS11575.1 WFIKKN2 gene_id:124857|Hs108|chr17          (576 aa)
 initn: 426 init1: 241 opt: 345  Z-score: 409.5  bits: 85.0 E(32554): 1.7e-16
Smith-Waterman score: 345; 31.5% identity (59.6% similar) in 178 aa overlap (166-340:271-439)

         140       150       160       170       180       190     
pF1KB6 KKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIFTMADRGECVPGEQEP
                                     ..:  .. . . .:.: . :.  : :  . 
CCDS11 ITWEKQLEDRENVVMRPNHVRGNVVVTNIAQLVIYNAQLQDAGIYTCTARN--VAGVLRA
              250       260       270       280       290          

          200       210       220       230       240       250    
pF1KB6 E-PILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGPCMGMTSRYFYNGTSM
       . :. . : ..:.  .:   .: .  ..:  :  :: .       :    .:. ... . 
CCDS11 DFPLSVVRGHQAAATSESSPNGTAFPAAECLKPPDSED-------CGEEQTRWHFDAQAN
      300       310       320       330              340       350 

          260       270       280         290       300       310  
pF1KB6 ACETFQYGGCMGNGNNFVTEKECLQTCRT--VAACNLPIVRGPCRAFIQLWAFDAVKGKC
        : :: .: :  : :.: : . :. .: .  .:::.:: ..:::.:.   ::...  :.:
CCDS11 NCLTFTFGHCHRNLNHFETYEACMLACMSGPLAACSLPALQGPCKAYAPRWAYNSQTGQC
             360       370       380       390       400       410 

            320       330       340       350                      
pF1KB6 VLFPYGGCQGNGNKFYSEKECREYCGVPGDGDEELLRFSN                    
         : ::::.::::.: :.. :.: :  :                                
CCDS11 QSFVYGGCEGNGNNFESREACEESCPFPRGNQRCRACKPRQKLVTSFCRSDFVILGRVSE
             420       430       440       450       460       470 

>>CCDS10414.1 WFIKKN1 gene_id:117166|Hs108|chr16          (548 aa)
 initn: 346 init1: 220 opt: 290  Z-score: 344.4  bits: 72.9 E(32554): 7.3e-13
Smith-Waterman score: 290; 40.2% identity (60.7% similar) in 107 aa overlap (240-340:306-412)

     210       220       230       240           250       260     
pF1KB6 QEEEGSGGGQLVTEVTKKEDSCQLGYSAGPCMGMTSRYF----YNGTSMACETFQYGGCM
                                     : : :: ..    :.    .: ::   :: 
CCDS10 FPLSVVQREPARDAAPSIPAPAECLPDVQACTGPTSPHLVLWHYDPQRGGCMTFPARGCD
         280       290       300       310       320       330     

         270       280         290       300       310       320   
pF1KB6 GNGNNFVTEKECLQTCRTVA--ACNLPIVRGPCRAFIQLWAFDAVKGKCVLFPYGGCQGN
       : . .: : . : :.:      :: :: :.::::..   ::.. .  .:  : ::::.::
CCDS10 GAARGFETYEACQQACARGPGDACVLPAVQGPCRGWEPRWAYSPLLQQCHPFVYGGCEGN
         340       350       360       370       380       390     

           330       340       350                                 
pF1KB6 GNKFYSEKECREYCGVPGDGDEELLRFSN                               
       ::.:.:.. :.. : ::                                           
CCDS10 GNNFHSRESCEDACPVPRTPPCRACRLRSKLALSLCRSDFAIVGRLTEVLEEPEAAGGIA
         400       410       420       430       440       450     

>>CCDS7019.1 PTGDS gene_id:5730|Hs108|chr9                (190 aa)
 initn: 244 init1: 175 opt: 261  Z-score: 316.4  bits: 66.2 E(32554): 2.6e-11
Smith-Waterman score: 261; 27.0% identity (61.8% similar) in 178 aa overlap (13-189:12-187)

               10        20        30        40        50        60
pF1KB6 MRSLGALLLLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIM
                   : :.: .    .:  ...:: ::. ... :.:.. ...:.  ::..  
CCDS70  MATHHTLWMGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKK
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB6 DRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMES
         ...   :..  ::.. ...:::  ::. ::  .   . . . :.. :.. .:. :.  
CCDS70 AALSMCKSVVAP-ATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSV
      60        70         80        90       100       110        

              130       140        150       160       170         
pF1KB6 YVVHTNYDEYAIFLTKKFSRHHGPTIT-AKLYGRAPQLRETLLQDFRVVAQGVGIPEDSI
        ::.:.::.::.. ..  :.  :  .  : ::.:.   :  : . : .  .. :. ::.:
CCDS70 SVVETDYDQYALLYSQG-SKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTI
      120       130        140       150       160       170       

     180       190       200       210       220       230         
pF1KB6 FTMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGP
         . .  .:.                                                  
CCDS70 VFLPQTDKCMTEQ                                               
       180       190                                               




352 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:56:34 2016 done: Fri Nov  4 20:56:34 2016
 Total Scan time:  2.220 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]