FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6458, 351 aa
  1>>>pF1KB6458 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4281+/-0.000332; mu= 6.1311+/- 0.021
 mean_var=123.6986+/-25.954, 0's: 0 Z-trim(118.9): 13  B-trim: 2292 in 2/49
 Lambda= 0.115317
 statistics sampled from 32386 (32410) to 32386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.38), width:  16
 Scan time:  9.040

The best scores are:                                      opt bits E(85289)
NP_054829 (OMIM: 602636) nuclear inhibitor of prot ( 351) 2378 406.5 4.5e-113
NP_612568 (OMIM: 602636) nuclear inhibitor of prot ( 209) 1407 244.8 1.2e-64
NP_002704 (OMIM: 602636) nuclear inhibitor of prot ( 127)  872 155.7   5e-38
XP_016857083 (OMIM: 602636) PREDICTED: nuclear inh ( 127)  872 155.7   5e-38


>>NP_054829 (OMIM: 602636) nuclear inhibitor of protein   (351 aa)
 initn: 2378 init1: 2378 opt: 2378  Z-score: 2151.0  bits: 406.5 E(85289): 4.5e-113
Smith-Waterman score: 2378; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB6 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB6 VDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 VDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              310       320       330       340       350 

>>NP_612568 (OMIM: 602636) nuclear inhibitor of protein   (209 aa)
 initn: 1407 init1: 1407 opt: 1407  Z-score: 1281.4  bits: 244.8 E(85289): 1.2e-64
Smith-Waterman score: 1407; 100.0% identity (100.0% similar) in 209 aa overlap (143-351:1-209)

            120       130       140       150       160       170  
pF1KB6 STVSFGASTRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTA
                                     ::::::::::::::::::::::::::::::
NP_612                               MGGEDDELKGLLGLPEEETELDNLTEFNTA
                                             10        20        30

            180       190       200       210       220       230  
pF1KB6 HNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 HNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVP
               40        50        60        70        80        90

            240       250       260       270       280       290  
pF1KB6 VKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 VKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPM
              100       110       120       130       140       150

            300       310       320       330       340       350 
pF1KB6 PYPNLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 PYPNLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              160       170       180       190       200         

>>NP_002704 (OMIM: 602636) nuclear inhibitor of protein   (127 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 803.7  bits: 155.7 E(85289): 5e-38
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 127 aa overlap (225-351:1-127)

          200       210       220       230       240       250    
pF1KB6 KRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEGPGSLGLEESGSRRM
                                     ::::::::::::::::::::::::::::::
NP_002                               MVQTAVVPVKKKRVEGPGSLGLEESGSRRM
                                             10        20        30

          260       270       280       290       300       310    
pF1KB6 QNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMN
               40        50        60        70        80        90

          320       330       340       350 
pF1KB6 PAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::
NP_002 PAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              100       110       120       

>>XP_016857083 (OMIM: 602636) PREDICTED: nuclear inhibit  (127 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 803.7  bits: 155.7 E(85289): 5e-38
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 127 aa overlap (225-351:1-127)

          200       210       220       230       240       250    
pF1KB6 KRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEGPGSLGLEESGSRRM
                                     ::::::::::::::::::::::::::::::
XP_016                               MVQTAVVPVKKKRVEGPGSLGLEESGSRRM
                                             10        20        30

          260       270       280       290       300       310    
pF1KB6 QNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMN
               40        50        60        70        80        90

          320       330       340       350 
pF1KB6 PAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::
XP_016 PAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              100       110       120       




351 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:04:08 2016 done: Fri Nov  4 23:04:09 2016
 Total Scan time:  9.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]