FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6458, 351 aa
  1>>>pF1KB6458 351 - 351 aa - 351 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9220+/-0.000773; mu= 9.0454+/- 0.047
 mean_var=114.3554+/-23.048, 0's: 0 Z-trim(111.9): 15  B-trim: 71 in 1/50
 Lambda= 0.119935
 statistics sampled from 12725 (12735) to 12725 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.391), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS311.1 PPP1R8 gene_id:5511|Hs108|chr1           ( 351) 2378 422.0 3.8e-118
CCDS312.1 PPP1R8 gene_id:5511|Hs108|chr1           ( 209) 1407 253.8 9.2e-68
CCDS313.1 PPP1R8 gene_id:5511|Hs108|chr1           ( 127)  872 161.1 4.5e-40


>>CCDS311.1 PPP1R8 gene_id:5511|Hs108|chr1                (351 aa)
 initn: 2378 init1: 2378 opt: 2378  Z-score: 2234.7  bits: 422.0 E(32554): 3.8e-118
Smith-Waterman score: 2378; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB6 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPD
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB6 VDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              310       320       330       340       350 

>>CCDS312.1 PPP1R8 gene_id:5511|Hs108|chr1                (209 aa)
 initn: 1407 init1: 1407 opt: 1407  Z-score: 1330.0  bits: 253.8 E(32554): 9.2e-68
Smith-Waterman score: 1407; 100.0% identity (100.0% similar) in 209 aa overlap (143-351:1-209)

            120       130       140       150       160       170  
pF1KB6 STVSFGASTRAYTLREKPQTLPSAVKGDEKMGGEDDELKGLLGLPEEETELDNLTEFNTA
                                     ::::::::::::::::::::::::::::::
CCDS31                               MGGEDDELKGLLGLPEEETELDNLTEFNTA
                                             10        20        30

            180       190       200       210       220       230  
pF1KB6 HNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVP
               40        50        60        70        80        90

            240       250       260       270       280       290  
pF1KB6 VKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPM
              100       110       120       130       140       150

            300       310       320       330       340       350 
pF1KB6 PYPNLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PYPNLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              160       170       180       190       200         

>>CCDS313.1 PPP1R8 gene_id:5511|Hs108|chr1                (127 aa)
 initn: 872 init1: 872 opt: 872  Z-score: 832.9  bits: 161.1 E(32554): 4.5e-40
Smith-Waterman score: 872; 100.0% identity (100.0% similar) in 127 aa overlap (225-351:1-127)

          200       210       220       230       240       250    
pF1KB6 KRKNSRVTFSEDDEIINPEDVDPSVGRFRNMVQTAVVPVKKKRVEGPGSLGLEESGSRRM
                                     ::::::::::::::::::::::::::::::
CCDS31                               MVQTAVVPVKKKRVEGPGSLGLEESGSRRM
                                             10        20        30

          260       270       280       290       300       310    
pF1KB6 QNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QNFAFSGGLYGGLPPTHSEAGSQPHGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMN
               40        50        60        70        80        90

          320       330       340       350 
pF1KB6 PAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
       :::::::::::::::::::::::::::::::::::::
CCDS31 PAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI
              100       110       120       




351 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:04:07 2016 done: Fri Nov  4 23:04:07 2016
 Total Scan time:  2.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]