Result of FASTA (ccds) for
pF1KB6457
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6457, 318 aa
1>>>pF1KB6457 318 - 318 aa - 318 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0082+/-0.000714; mu= 13.3953+/- 0.043
mean_var=85.9971+/-17.041, 0's: 0 Z-trim(111.2): 51 B-trim: 4 in 1/50
Lambda= 0.138303
statistics sampled from 12125 (12177) to 12125 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.374), width: 16
Scan time: 2.500
The best scores are: opt bits E(32554)
CCDS5021.1 UBE2J1 gene_id:51465|Hs108|chr6 ( 318) 2122 432.7 1.8e-121
CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 259) 454 99.8 2.4e-21
CCDS15.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 275) 371 83.3 2.4e-16
CCDS16.1 UBE2J2 gene_id:118424|Hs108|chr1 ( 207) 332 75.4 4.2e-14
>>CCDS5021.1 UBE2J1 gene_id:51465|Hs108|chr6 (318 aa)
initn: 2122 init1: 2122 opt: 2122 Z-score: 2294.1 bits: 432.7 E(32554): 1.8e-121
Smith-Waterman score: 2122; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB6 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSYGVQNSSAASFHQP
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS50 RQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGATASTSYGLQNSSAASFHQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TQPVAKNTSMSPRQRRAQQQSQRRLSTSPDVIQGHQPRDNHTDHGGSAVLIVILTLALAA
250 260 270 280 290 300
310
pF1KB6 LIFRRIYLANEYIFDFEL
::::::::::::::::::
CCDS50 LIFRRIYLANEYIFDFEL
310
>>CCDS14.1 UBE2J2 gene_id:118424|Hs108|chr1 (259 aa)
initn: 416 init1: 416 opt: 454 Z-score: 496.8 bits: 99.8 E(32554): 2.4e-21
Smith-Waterman score: 454; 40.7% identity (73.3% similar) in 150 aa overlap (1-147:1-149)
10 20 30 40 50
pF1KB6 METRYNLKSP--AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGV
: . . ..: :..:: .. ..: ::. . :.:: .:..:::..:::: . ..::
CCDS14 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 YHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIG
:::....: :.:.::::: ..: ::::. . ..::::. ::.::.:.::. : : ....
CCDS14 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAK
:: :: ..::.. . .: :: .: :
CCDS14 FMVEKGP-TLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS
130 140 150 160 170
>>CCDS15.1 UBE2J2 gene_id:118424|Hs108|chr1 (275 aa)
initn: 402 init1: 343 opt: 371 Z-score: 406.9 bits: 83.3 E(32554): 2.4e-16
Smith-Waterman score: 412; 36.7% identity (66.3% similar) in 166 aa overlap (1-147:1-165)
10 20 30 40
pF1KB6 METRYNLKSP--AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEW----------------
: . . ..: :..:: .. ..: ::. . :.:: .:..::
CCDS15 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWFKRFSWLSLLSSWDYR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 HFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPET
:..:::: . ..:: :::....: :.:.::::: ..: ::::. . ..::::. ::.:
CCDS15 HYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 WQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLL
:.:.::. : : ....:: :: ..::.. . .: :: .: :
CCDS15 WNPAWSVSTILTGLLSFMVEKGP-TLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEV
130 140 150 160 170
170 180 190 200 210 220
pF1KB6 PLKSGSDSSQADQEAKELARQISFKAEVNSSGKTISESDLNHSFSLTDLQDDIPTTFQGA
CCDS15 VEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQAN
180 190 200 210 220 230
>>CCDS16.1 UBE2J2 gene_id:118424|Hs108|chr1 (207 aa)
initn: 304 init1: 304 opt: 332 Z-score: 366.7 bits: 75.4 E(32554): 4.2e-14
Smith-Waterman score: 332; 43.3% identity (75.3% similar) in 97 aa overlap (51-147:2-97)
30 40 50 60 70 80
pF1KB6 ELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA
. ..:: :::....: :.:.::::: ..:
CCDS16 MTPYEGGYYHGKLIFPREFPFKPPSIYMITP
10 20 30
90 100 110 120 130 140
pF1KB6 NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRAL
::::. . ..::::. ::.::.:.::. : : ....:: :: ..::.. . .: :
CCDS16 NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP-TLGSIETSDFTKRQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 AKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKTISESD
: .: :
CCDS16 AVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGI
100 110 120 130 140 150
318 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:02:39 2016 done: Fri Nov 4 23:02:40 2016
Total Scan time: 2.500 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]