Result of FASTA (omim) for
pF1KB6453
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6453, 318 aa
1>>>pF1KB6453 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5218+/-0.000302; mu= 15.5990+/- 0.019
mean_var=78.4168+/-15.335, 0's: 0 Z-trim(118.4): 7 B-trim: 209 in 1/51
Lambda= 0.144834
statistics sampled from 31306 (31312) to 31306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.367), width: 16
Scan time: 7.740
The best scores are: opt bits E(85289)
NP_542380 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318) 2175 463.5 2.6e-130
NP_542379 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318) 2175 463.5 2.6e-130
NP_001632 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318) 2175 463.5 2.6e-130
NP_001231178 (OMIM: 107748) DNA-(apurinic or apyri ( 318) 2175 463.5 2.6e-130
NP_001258677 (OMIM: 300773) DNA-(apurinic or apyri ( 347) 185 47.7 4.2e-05
NP_055296 (OMIM: 300773) DNA-(apurinic or apyrimid ( 518) 187 48.2 4.3e-05
>>NP_542380 (OMIM: 107748) DNA-(apurinic or apyrimidinic (318 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2460.4 bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_542 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
250 260 270 280 290 300
310
pF1KB6 RSKALGSDHCPITLYLAL
::::::::::::::::::
NP_542 RSKALGSDHCPITLYLAL
310
>>NP_542379 (OMIM: 107748) DNA-(apurinic or apyrimidinic (318 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2460.4 bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_542 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
250 260 270 280 290 300
310
pF1KB6 RSKALGSDHCPITLYLAL
::::::::::::::::::
NP_542 RSKALGSDHCPITLYLAL
310
>>NP_001632 (OMIM: 107748) DNA-(apurinic or apyrimidinic (318 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2460.4 bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
250 260 270 280 290 300
310
pF1KB6 RSKALGSDHCPITLYLAL
::::::::::::::::::
NP_001 RSKALGSDHCPITLYLAL
310
>>NP_001231178 (OMIM: 107748) DNA-(apurinic or apyrimidi (318 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2460.4 bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
250 260 270 280 290 300
310
pF1KB6 RSKALGSDHCPITLYLAL
::::::::::::::::::
NP_001 RSKALGSDHCPITLYLAL
310
>>NP_001258677 (OMIM: 300773) DNA-(apurinic or apyrimidi (347 aa)
initn: 203 init1: 107 opt: 185 Z-score: 212.6 bits: 47.7 E(85289): 4.2e-05
Smith-Waterman score: 185; 31.5% identity (57.7% similar) in 130 aa overlap (199-318:15-142)
170 180 190 200 210 220
pF1KB6 TAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKK
::. . ... ::::.::. :: . : .
NP_001 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAV-NLE
10 20 30 40
230 240 250 260 270
pF1KB6 NAGFTPQERQGFGELLQAV---------PLADSFRHLYPNTPYAYTFWTYMMNARSKNVG
: :. . ::. . :. ::.: . :. :.: :. . .:: : :
NP_001 CFEEDPG-RKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYG
50 60 70 80 90 100
280 290 300 310
pF1KB6 WRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL
:::: : ...: . .. : . ...::::::. :..
NP_001 SRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFA
110 120 130 140 150 160
NP_001 GTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNL
170 180 190 200 210 220
>>NP_055296 (OMIM: 300773) DNA-(apurinic or apyrimidinic (518 aa)
initn: 276 init1: 107 opt: 187 Z-score: 212.4 bits: 48.2 E(85289): 4.3e-05
Smith-Waterman score: 280; 27.2% identity (51.9% similar) in 320 aa overlap (62-318:2-313)
40 50 60 70 80
pF1KB6 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAP--
:.. :::..:.: . :. : .. :
NP_055 MLRVVSWNINGIR-----RPLQGVANQEPSN
10 20
90 100 110 120 130
pF1KB6 ---------------DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGV---
::.:::::: ... : : . : . .:.: .. :::::
NP_055 CAAVAVGRILDELDADIVCLQETKVTRDALTEPLAIVEGYN-SYFSFSRNRSGYSGVATF
30 40 50 60 70 80
140 150 160
pF1KB6 ---------------GLLSRQCPLKVSYG----IGEEEH---DQEGRVIVAEFD------
::.. : :: . .:: :.:::.....
NP_055 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG
90 100 110 120 130 140
170 180 190 200 210
pF1KB6 ---SFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEI
...:...: :.: : :: ...:. . .. ..: :. . ... ::::.::. :
NP_055 KEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI
150 160 170 180 190 200
220 230 240 250 260
pF1KB6 DLRNPKGNKKNAGFTPQERQGFGELLQAV---------PLADSFRHLYPNTPYAYTFWTY
: . : . : :. . ::. . :. ::.: . :. :.: :.
NP_055 DHWDAV-NLECFEEDPG-RKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSA
210 220 230 240 250 260
270 280 290 300 310
pF1KB6 MMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL
. .:: : : :::: : ...: . .. : . ...::::::. :..
NP_055 VTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPP
270 280 290 300 310 320
NP_055 LCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQ
330 340 350 360 370 380
318 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:00:06 2016 done: Fri Nov 4 23:00:07 2016
Total Scan time: 7.740 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]