FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6447, 242 aa
  1>>>pF1KB6447 242 - 242 aa - 242 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8189+/-0.00121; mu= 4.3594+/- 0.072
 mean_var=199.4895+/-40.510, 0's: 0 Z-trim(106.4): 19  B-trim: 149 in 2/52
 Lambda= 0.090806
 statistics sampled from 8943 (8948) to 8943 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.275), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS54088.1 CCDC42 gene_id:146849|Hs108|chr17      ( 242) 1548 215.1 3.3e-56
CCDS11145.1 CCDC42 gene_id:146849|Hs108|chr17      ( 316) 1057 150.9 9.2e-37


>>CCDS54088.1 CCDC42 gene_id:146849|Hs108|chr17           (242 aa)
 initn: 1548 init1: 1548 opt: 1548  Z-score: 1122.6  bits: 215.1 E(32554): 3.3e-56
Smith-Waterman score: 1548; 100.0% identity (100.0% similar) in 242 aa overlap (1-242:1-242)

               10        20        30        40        50        60
pF1KB6 MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 HMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSEESRWAHIQNTAAKKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSEESRWAHIQNTAAKKTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRSDIWAEVKKKEQQRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRSDIWAEVKKKEQQRV
              190       200       210       220       230       240

         
pF1KB6 RI
       ::
CCDS54 RI
         

>>CCDS11145.1 CCDC42 gene_id:146849|Hs108|chr17           (316 aa)
 initn: 1534 init1: 1055 opt: 1057  Z-score: 773.5  bits: 150.9 E(32554): 9.2e-37
Smith-Waterman score: 1120; 73.0% identity (73.0% similar) in 274 aa overlap (1-200:1-274)

               10        20        30        40        50        60
pF1KB6 MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSLGIMEEEDLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQ
               70        80        90       100       110       120

              130       140       150       160                    
pF1KB6 HMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSE----------------
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS11 HMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSEFEEIHEVIARYKTLVS
              130       140       150       160       170       180

                                                                   
pF1KB6 ----------------------------------------------------------ES
                                                                 ::
CCDS11 MRHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQQNNELARLQMRFDRARSNVIFWES
              190       200       210       220       230       240

        170       180       190       200       210       220      
pF1KB6 RWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRS
       ::::::::::::::::::::::::::::::::::                          
CCDS11 RWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRS
              250       260       270       280       290       300

        230       240  
pF1KB6 DIWAEVKKKEQQRVRI
                       
CCDS11 DIWAEVKKKEQQRVRI
              310      




242 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:54:50 2016 done: Fri Nov  4 20:54:51 2016
 Total Scan time:  2.250 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]