Result of FASTA (omim) for
pF1KB6446
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6446, 347 aa
1>>>pF1KB6446 347 - 347 aa - 347 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5951+/-0.000351; mu= 0.0462+/- 0.022
mean_var=355.9533+/-71.640, 0's: 0 Z-trim(125.3): 30 B-trim: 0 in 0/61
Lambda= 0.067979
statistics sampled from 48619 (48649) to 48619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.57), width: 16
Scan time: 10.040
The best scores are: opt bits E(85289)
XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ( 347) 2428 251.1 2.6e-66
XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ( 347) 2428 251.1 2.6e-66
NP_001273175 (OMIM: 613142) probable E3 ubiquitin- ( 347) 2428 251.1 2.6e-66
NP_848597 (OMIM: 613142) probable E3 ubiquitin-pro ( 347) 2428 251.1 2.6e-66
NP_001273174 (OMIM: 613142) probable E3 ubiquitin- ( 350) 2394 247.8 2.6e-65
XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ( 350) 2394 247.8 2.6e-65
XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ( 350) 2394 247.8 2.6e-65
XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ( 350) 2394 247.8 2.6e-65
NP_612144 (OMIM: 613143) E3 ubiquitin-protein liga ( 740) 751 87.0 1.4e-16
XP_016867216 (OMIM: 613141) PREDICTED: probable E3 ( 575) 487 61.0 7.2e-09
XP_016867215 (OMIM: 613141) PREDICTED: probable E3 ( 575) 487 61.0 7.2e-09
NP_001096066 (OMIM: 613141) probable E3 ubiquitin- ( 575) 487 61.0 7.2e-09
XP_016867214 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
XP_011514075 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
NP_001096064 (OMIM: 613141) probable E3 ubiquitin- ( 622) 487 61.1 7.6e-09
XP_011514076 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
XP_005250188 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
XP_005250189 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
XP_011514077 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
XP_016867212 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
NP_001096065 (OMIM: 613141) probable E3 ubiquitin- ( 622) 487 61.1 7.6e-09
XP_011514074 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
XP_016867213 (OMIM: 613141) PREDICTED: probable E3 ( 622) 487 61.1 7.6e-09
NP_065943 (OMIM: 613141) probable E3 ubiquitin-pro ( 622) 487 61.1 7.6e-09
NP_001287656 (OMIM: 616110) E3 ubiquitin-protein l ( 513) 424 54.8 4.9e-07
XP_006718546 (OMIM: 616110) PREDICTED: E3 ubiquiti ( 513) 424 54.8 4.9e-07
NP_055992 (OMIM: 616110) E3 ubiquitin-protein liga ( 619) 424 54.9 5.5e-07
NP_004407 (OMIM: 602582) E3 ubiquitin-protein liga ( 620) 409 53.4 1.5e-06
XP_011536311 (OMIM: 602582) PREDICTED: E3 ubiquiti ( 620) 409 53.4 1.5e-06
XP_016867217 (OMIM: 613141) PREDICTED: probable E3 ( 568) 336 46.2 0.00021
>>XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ubi (347 aa)
initn: 2428 init1: 2428 opt: 2428 Z-score: 1311.5 bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
250 260 270 280 290 300
310 320 330 340
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340
>>XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ubi (347 aa)
initn: 2428 init1: 2428 opt: 2428 Z-score: 1311.5 bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
250 260 270 280 290 300
310 320 330 340
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
:::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340
>>NP_001273175 (OMIM: 613142) probable E3 ubiquitin-prot (347 aa)
initn: 2428 init1: 2428 opt: 2428 Z-score: 1311.5 bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
250 260 270 280 290 300
310 320 330 340
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340
>>NP_848597 (OMIM: 613142) probable E3 ubiquitin-protein (347 aa)
initn: 2428 init1: 2428 opt: 2428 Z-score: 1311.5 bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)
10 20 30 40 50 60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
250 260 270 280 290 300
310 320 330 340
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_848 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340
>>NP_001273174 (OMIM: 613142) probable E3 ubiquitin-prot (350 aa)
initn: 2394 init1: 2394 opt: 2394 Z-score: 1293.5 bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)
10 20 30 40 50
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
:.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
250 260 270 280 290 300
300 310 320 330 340
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340 350
>>XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ubi (350 aa)
initn: 2394 init1: 2394 opt: 2394 Z-score: 1293.5 bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)
10 20 30 40 50
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
:.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
250 260 270 280 290 300
300 310 320 330 340
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340 350
>>XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ubi (350 aa)
initn: 2394 init1: 2394 opt: 2394 Z-score: 1293.5 bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)
10 20 30 40 50
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
:.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
250 260 270 280 290 300
300 310 320 330 340
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340 350
>>XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ubi (350 aa)
initn: 2394 init1: 2394 opt: 2394 Z-score: 1293.5 bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)
10 20 30 40 50
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
:.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
250 260 270 280 290 300
300 310 320 330 340
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
310 320 330 340 350
>>NP_612144 (OMIM: 613143) E3 ubiquitin-protein ligase D (740 aa)
initn: 742 init1: 532 opt: 751 Z-score: 418.8 bits: 87.0 E(85289): 1.4e-16
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (143-344:540-739)
120 130 140 150 160 170
pF1KB6 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
::: . . : ..... : ::. :.
NP_612 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
510 520 530 540 550 560
180 190 200 210 220 230
pF1KB6 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
NP_612 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
570 580 590 600 610 620
240 250 260 270 280 290
pF1KB6 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
NP_612 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
630 640 650 660 670 680
300 310 320 330 340
pF1KB6 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
NP_612 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
690 700 710 720 730 740
>>XP_016867216 (OMIM: 613141) PREDICTED: probable E3 ubi (575 aa)
initn: 476 init1: 319 opt: 487 Z-score: 280.2 bits: 61.0 E(85289): 7.2e-09
Smith-Waterman score: 512; 38.0% identity (55.3% similar) in 255 aa overlap (122-347:326-570)
100 110 120 130 140 150
pF1KB6 ELKKAQRQGELMGCLALGGGGEHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPP
: : :. : : : : : : .
XP_016 SSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA----GATPKPEPEPEQVIK
300 310 320 330 340 350
160 170 180
pF1KB6 RLREEAE-EQESTCPICL---------GEIQNAKT--------LEKCRHSF---------
:: . . : ::. ... ..:. : :: :.:
XP_016 NYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMY
360 370 380 390 400 410
190 200 210 220 230 240
pF1KB6 CEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVIQYVF
:.: .:: :: : .::. .:.::: :.: : . . ::..: :::.: : .
XP_016 CNGNKDGSLQ----CPSCKTIYGEKTGTQPQ-GKMEVLR-FQMSLPGHEDCGTILIVYSI
420 430 440 450 460
250 260 270 280 290 300
pF1KB6 PPGVQGAEHPNPGVRYP--GTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTTGR
: :.:: :::::: . : : :::: .: ::: :.. :. .:: ::.::: :::.
XP_016 PHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGE
470 480 490 500 510 520
310 320 330 340
pF1KB6 PNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
....::.::::: . :::::.:: : :: :.:.:.:
XP_016 TDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
530 540 550 560 570
347 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:39:00 2016 done: Fri Nov 4 22:39:01 2016
Total Scan time: 10.040 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]