FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6446, 347 aa
  1>>>pF1KB6446 347 - 347 aa - 347 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4024+/-0.000897; mu= 1.4275+/- 0.055
 mean_var=338.4958+/-69.086, 0's: 0 Z-trim(117.5): 9  B-trim: 0 in 0/54
 Lambda= 0.069710
 statistics sampled from 18279 (18288) to 18279 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.562), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS41800.1 DTX3 gene_id:196403|Hs108|chr12        ( 347) 2428 257.1 1.6e-68
CCDS66410.1 DTX3 gene_id:196403|Hs108|chr12        ( 350) 2394 253.6 1.8e-67
CCDS3015.1 DTX3L gene_id:151636|Hs108|chr3         ( 740)  751 88.8 1.6e-17


>>CCDS41800.1 DTX3 gene_id:196403|Hs108|chr12             (347 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1343.5  bits: 257.1 E(32554): 1.6e-68
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
              250       260       270       280       290       300

              310       320       330       340       
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       

>>CCDS66410.1 DTX3 gene_id:196403|Hs108|chr12             (350 aa)
 initn: 2394 init1: 2394 opt: 2394  Z-score: 1325.0  bits: 253.6 E(32554): 1.8e-67
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)

                  10        20        30        40        50       
pF1KB6    MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               :.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
              250       260       270       280       290       300

       300       310       320       330       340       
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       350

>>CCDS3015.1 DTX3L gene_id:151636|Hs108|chr3              (740 aa)
 initn: 742 init1: 532 opt: 751  Z-score: 428.1  bits: 88.8 E(32554): 1.6e-17
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (143-344:540-739)

            120       130       140       150       160       170  
pF1KB6 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
                                     :::   .  .  :  ..... : ::.  :.
CCDS30 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
     510       520       530       540       550       560         

            180       190       200       210       220         230
pF1KB6 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
       : :.: ::.: ::  ::..:.. :  :: :   ::   ::::. : :.  ::.:.   ::
CCDS30 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
     570       580       590       600       610        620        

              240       250       260       270       280       290
pF1KB6 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
       .::..::::: : .  :.:  :::::: ::::  :.:::::  :: ::: :. .::::.:
CCDS30 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
         630       640       650       660       670       680     

              300       310       320       330       340       
pF1KB6 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
        ::.: : . :  .::::::::::::  :::...:::::.:: ::.:::.::::   
CCDS30 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE  
         690       700       710       720       730       740  




347 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:38:59 2016 done: Fri Nov  4 22:39:00 2016
 Total Scan time:  3.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]