FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6445, 315 aa
  1>>>pF1KB6445 315 - 315 aa - 315 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1080+/-0.000767; mu= 11.9301+/- 0.046
 mean_var=76.9531+/-15.035, 0's: 0 Z-trim(109.5): 21  B-trim: 93 in 1/50
 Lambda= 0.146205
 statistics sampled from 10958 (10965) to 10958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS8055.1 OTUB1 gene_id:55611|Hs108|chr11         ( 271) 1044 229.3 2.7e-60
CCDS9917.1 OTUB2 gene_id:78990|Hs108|chr14         ( 234)  521 118.9 3.8e-27


>>CCDS8055.1 OTUB1 gene_id:55611|Hs108|chr11              (271 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1196.0  bits: 229.3 E(32554): 2.7e-60
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 159 aa overlap (157-315:113-271)

        130       140       150       160       170       180      
pF1KB6 GLARRGSAVSALASGLVEEPMLGPPFHPTPRFKAVSAKSKEDLVSQGFTEFTIEDFHNTF
                                     ::::::::::::::::::::::::::::::
CCDS80 RKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTF
             90       100       110       120       130       140  

        190       200       210       220       230       240      
pF1KB6 MDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKE
            150       160       170       180       190       200  

        250       260       270       280       290       300      
pF1KB6 FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 FCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYR
            210       220       230       240       250       260  

        310     
pF1KB6 PGHYDILYK
       :::::::::
CCDS80 PGHYDILYK
            270 

>>CCDS9917.1 OTUB2 gene_id:78990|Hs108|chr14              (234 aa)
 initn: 519 init1: 409 opt: 521  Z-score: 600.8  bits: 118.9 E(32554): 3.8e-27
Smith-Waterman score: 521; 47.1% identity (76.5% similar) in 170 aa overlap (145-314:62-229)

          120       130       140       150       160       170    
pF1KB6 VSPSFPGDGLDSGLARRGSAVSALASGLVEEPMLGPPFHPTPRFKAVSAKSKEDLVSQGF
                                     : .::   .   .::    .. .::.. ::
CCDS99 IEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKS-REIFKFKERVLQTPNDLLAAGF
              40        50        60         70        80        90

          180       190       200       210       220       230    
pF1KB6 TEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFF
        :  ...: :.:....: :::. ::..::  :::::.::..: .::::::.... .. ::
CCDS99 EEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFF
              100       110       120       130       140       150

          240       250       260       270       280       290    
pF1KB6 EHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP
       .:::.    .:.:: .:::::  : :::.: ::.::::...::::.:. . .  : :.::
CCDS99 RHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTAL-NHHVFP
              160       170       180       190       200          

          300       310         
pF1KB6 EGSEPKVYLLYRPGHYDILYK    
       :.. :.:::::. .::.:::     
CCDS99 EAATPSVYLLYKTSHYNILYAADKH
     210       220       230    




315 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:07:21 2016 done: Sat Nov  5 20:07:21 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]