Result of FASTA (omim) for
pF1KB6437
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6437, 313 aa
1>>>pF1KB6437 313 - 313 aa - 313 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1726+/-0.000563; mu= 12.1284+/- 0.034
mean_var=182.1616+/-41.220, 0's: 0 Z-trim(112.2): 667 B-trim: 1211 in 2/52
Lambda= 0.095027
statistics sampled from 20115 (21009) to 20115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.246), width: 16
Scan time: 7.120
The best scores are: opt bits E(85289)
NP_075526 (OMIM: 605787) ankyrin repeat family A p ( 313) 2056 294.8 1.5e-79
XP_005248617 (OMIM: 605787) PREDICTED: ankyrin rep ( 245) 1427 208.4 1.2e-53
XP_016865167 (OMIM: 605787) PREDICTED: ankyrin rep ( 152) 1003 150.0 2.9e-36
XP_016882904 (OMIM: 209920,603200) PREDICTED: DNA- ( 260) 795 121.8 1.5e-27
NP_003712 (OMIM: 209920,603200) DNA-binding protei ( 260) 795 121.8 1.5e-27
XP_005260192 (OMIM: 209920,603200) PREDICTED: DNA- ( 260) 795 121.8 1.5e-27
XP_005260191 (OMIM: 209920,603200) PREDICTED: DNA- ( 260) 795 121.8 1.5e-27
XP_005260193 (OMIM: 209920,603200) PREDICTED: DNA- ( 259) 791 121.2 2.2e-27
XP_005260194 (OMIM: 209920,603200) PREDICTED: DNA- ( 259) 791 121.2 2.2e-27
XP_006722993 (OMIM: 209920,603200) PREDICTED: DNA- ( 259) 791 121.2 2.2e-27
XP_016882905 (OMIM: 209920,603200) PREDICTED: DNA- ( 238) 650 101.9 1.4e-21
NP_001265656 (OMIM: 209920,603200) DNA-binding pro ( 238) 650 101.9 1.4e-21
NP_604389 (OMIM: 209920,603200) DNA-binding protei ( 237) 642 100.8 3e-21
NP_001265657 (OMIM: 209920,603200) DNA-binding pro ( 237) 642 100.8 3e-21
NP_065789 (OMIM: 615759) kinase D-interacting subs (1771) 293 54.1 2.4e-06
XP_016872415 (OMIM: 611640) PREDICTED: fibronectin ( 197) 253 47.3 3e-05
XP_005270337 (OMIM: 611640) PREDICTED: fibronectin ( 197) 253 47.3 3e-05
XP_011538664 (OMIM: 611640) PREDICTED: fibronectin ( 197) 253 47.3 3e-05
XP_011538663 (OMIM: 611640) PREDICTED: fibronectin ( 254) 253 47.5 3.5e-05
XP_011538662 (OMIM: 611640) PREDICTED: fibronectin ( 254) 253 47.5 3.5e-05
XP_016872413 (OMIM: 611640) PREDICTED: fibronectin ( 254) 253 47.5 3.5e-05
NP_001139381 (OMIM: 611397) protein TANC1 isoform (1390) 263 49.9 3.6e-05
XP_011510364 (OMIM: 611397) PREDICTED: protein TAN (1554) 263 49.9 3.9e-05
NP_002805 (OMIM: 300880) 26S proteasome non-ATPase ( 226) 251 47.1 3.9e-05
XP_016872411 (OMIM: 611640) PREDICTED: fibronectin ( 313) 253 47.6 3.9e-05
NP_001014794 (OMIM: 602366) integrin-linked protei ( 452) 255 48.1 4e-05
XP_005252961 (OMIM: 602366) PREDICTED: integrin-li ( 452) 255 48.1 4e-05
NP_004508 (OMIM: 602366) integrin-linked protein k ( 452) 255 48.1 4e-05
XP_011518367 (OMIM: 602366) PREDICTED: integrin-li ( 452) 255 48.1 4e-05
NP_001014795 (OMIM: 602366) integrin-linked protei ( 452) 255 48.1 4e-05
XP_016860646 (OMIM: 611397) PREDICTED: protein TAN (1660) 263 50.0 4e-05
XP_006712877 (OMIM: 611397) PREDICTED: protein TAN (1677) 263 50.0 4.1e-05
XP_016860645 (OMIM: 611397) PREDICTED: protein TAN (1685) 263 50.0 4.1e-05
XP_011510361 (OMIM: 611397) PREDICTED: protein TAN (1697) 263 50.0 4.1e-05
XP_016872410 (OMIM: 611640) PREDICTED: fibronectin ( 339) 253 47.6 4.1e-05
XP_016860644 (OMIM: 611397) PREDICTED: protein TAN (1738) 263 50.0 4.2e-05
NP_660278 (OMIM: 611640) fibronectin type 3 and an ( 345) 253 47.7 4.2e-05
XP_006718127 (OMIM: 611640) PREDICTED: fibronectin ( 345) 253 47.7 4.2e-05
XP_011510360 (OMIM: 611397) PREDICTED: protein TAN (1755) 263 50.0 4.2e-05
XP_016860642 (OMIM: 611397) PREDICTED: protein TAN (1773) 263 50.0 4.2e-05
XP_016860643 (OMIM: 611397) PREDICTED: protein TAN (1773) 263 50.0 4.2e-05
XP_016860641 (OMIM: 611397) PREDICTED: protein TAN (1790) 263 50.0 4.2e-05
XP_016860640 (OMIM: 611397) PREDICTED: protein TAN (1791) 263 50.0 4.2e-05
XP_011538658 (OMIM: 611640) PREDICTED: fibronectin ( 355) 253 47.7 4.2e-05
XP_016872409 (OMIM: 611640) PREDICTED: fibronectin ( 359) 253 47.7 4.3e-05
XP_006718121 (OMIM: 611640) PREDICTED: fibronectin ( 361) 253 47.7 4.3e-05
XP_006712875 (OMIM: 611397) PREDICTED: protein TAN (1826) 263 50.0 4.3e-05
XP_016860639 (OMIM: 611397) PREDICTED: protein TAN (1838) 263 50.0 4.3e-05
XP_016860638 (OMIM: 611397) PREDICTED: protein TAN (1844) 263 50.0 4.3e-05
XP_016872406 (OMIM: 611640) PREDICTED: fibronectin ( 365) 253 47.7 4.3e-05
>>NP_075526 (OMIM: 605787) ankyrin repeat family A prote (313 aa)
initn: 2056 init1: 2056 opt: 2056 Z-score: 1549.0 bits: 294.8 E(85289): 1.5e-79
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313)
10 20 30 40 50 60
pF1KB6 MDTSTNLDIGAQLIVEECPSTYSLTGMPDIKIEHPLDPNSEEGSAQGVAMGMKFILPNRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 MDTSTNLDIGAQLIVEECPSTYSLTGMPDIKIEHPLDPNSEEGSAQGVAMGMKFILPNRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIHTSPSPGIQVRHVYTPSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 DMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIHTSPSPGIQVRHVYTPSTT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 KHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_075 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI
250 260 270 280 290 300
310
pF1KB6 ESHLLKLLQNIKE
:::::::::::::
NP_075 ESHLLKLLQNIKE
310
>>XP_005248617 (OMIM: 605787) PREDICTED: ankyrin repeat (245 aa)
initn: 1427 init1: 1427 opt: 1427 Z-score: 1084.1 bits: 208.4 E(85289): 1.2e-53
Smith-Waterman score: 1427; 100.0% identity (100.0% similar) in 217 aa overlap (97-313:29-245)
70 80 90 100 110 120
pF1KB6 RFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIHTSPSPGIQVRHVYTPSTTKHFSPI
::::::::::::::::::::::::::::::
XP_005 MKKIVKIFKIRLTLTWRWHLSYLKVESYAECNIHTSPSPGIQVRHVYTPSTTKHFSPI
10 20 30 40 50
130 140 150 160 170 180
pF1KB6 KQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB6 MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB6 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK
180 190 200 210 220 230
310
pF1KB6 LLQNIKE
:::::::
XP_005 LLQNIKE
240
>>XP_016865167 (OMIM: 605787) PREDICTED: ankyrin repeat (152 aa)
initn: 1003 init1: 1003 opt: 1003 Z-score: 772.1 bits: 150.0 E(85289): 2.9e-36
Smith-Waterman score: 1003; 100.0% identity (100.0% similar) in 152 aa overlap (162-313:1-152)
140 150 160 170 180 190
pF1KB6 LTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAA
::::::::::::::::::::::::::::::
XP_016 MLYLATRIEQENVINHTDEEGFTPLMWAAA
10 20 30
200 210 220 230 240 250
pF1KB6 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP
40 50 60 70 80 90
260 270 280 290 300 310
pF1KB6 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI
100 110 120 130 140 150
pF1KB6 KE
::
XP_016 KE
>>XP_016882904 (OMIM: 209920,603200) PREDICTED: DNA-bind (260 aa)
initn: 872 init1: 613 opt: 795 Z-score: 615.5 bits: 121.8 E(85289): 1.5e-27
Smith-Waterman score: 795; 58.6% identity (78.9% similar) in 227 aa overlap (86-310:35-252)
60 70 80 90 100 110
pF1KB6 LPNRFDMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIH-TSPSPGIQVRHV
:: : : :: :. . ..: : .:
XP_016 QPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLS-LFP--CTPEPVNPEPDASV---
10 20 30 40 50
120 130 140 150 160 170
pF1KB6 YTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQ-EN
:. . : .:.::::::..::::::. : .:::.::::::::. : .... .:
XP_016 ---SSPQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDN
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB6 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM
..:. ::.:::::.::.: :.: .:.:::. ::::..:.: :::::::: . :::::: .
XP_016 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB6 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY
::. ::.: :::::::::::::.:::::::. :: ::: : :.::::. :::::::::
XP_016 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY
180 190 200 210 220 230
300 310
pF1KB6 RSVQQVIESHLLKLLQNIKE
:.::::::.:.:::.:.
XP_016 RKVQQVIENHILKLFQSNLVPADPE
240 250 260
>>NP_003712 (OMIM: 209920,603200) DNA-binding protein RF (260 aa)
initn: 872 init1: 613 opt: 795 Z-score: 615.5 bits: 121.8 E(85289): 1.5e-27
Smith-Waterman score: 795; 58.6% identity (78.9% similar) in 227 aa overlap (86-310:35-252)
60 70 80 90 100 110
pF1KB6 LPNRFDMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIH-TSPSPGIQVRHV
:: : : :: :. . ..: : .:
NP_003 QPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLS-LFP--CTPEPVNPEPDASV---
10 20 30 40 50
120 130 140 150 160 170
pF1KB6 YTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQ-EN
:. . : .:.::::::..::::::. : .:::.::::::::. : .... .:
NP_003 ---SSPQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDN
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB6 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM
..:. ::.:::::.::.: :.: .:.:::. ::::..:.: :::::::: . :::::: .
NP_003 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB6 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY
::. ::.: :::::::::::::.:::::::. :: ::: : :.::::. :::::::::
NP_003 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY
180 190 200 210 220 230
300 310
pF1KB6 RSVQQVIESHLLKLLQNIKE
:.::::::.:.:::.:.
NP_003 RKVQQVIENHILKLFQSNLVPADPE
240 250 260
>>XP_005260192 (OMIM: 209920,603200) PREDICTED: DNA-bind (260 aa)
initn: 872 init1: 613 opt: 795 Z-score: 615.5 bits: 121.8 E(85289): 1.5e-27
Smith-Waterman score: 795; 58.6% identity (78.9% similar) in 227 aa overlap (86-310:35-252)
60 70 80 90 100 110
pF1KB6 LPNRFDMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIH-TSPSPGIQVRHV
:: : : :: :. . ..: : .:
XP_005 QPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLS-LFP--CTPEPVNPEPDASV---
10 20 30 40 50
120 130 140 150 160 170
pF1KB6 YTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQ-EN
:. . : .:.::::::..::::::. : .:::.::::::::. : .... .:
XP_005 ---SSPQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDN
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB6 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM
..:. ::.:::::.::.: :.: .:.:::. ::::..:.: :::::::: . :::::: .
XP_005 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB6 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY
::. ::.: :::::::::::::.:::::::. :: ::: : :.::::. :::::::::
XP_005 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY
180 190 200 210 220 230
300 310
pF1KB6 RSVQQVIESHLLKLLQNIKE
:.::::::.:.:::.:.
XP_005 RKVQQVIENHILKLFQSNLVPADPE
240 250 260
>>XP_005260191 (OMIM: 209920,603200) PREDICTED: DNA-bind (260 aa)
initn: 872 init1: 613 opt: 795 Z-score: 615.5 bits: 121.8 E(85289): 1.5e-27
Smith-Waterman score: 795; 58.6% identity (78.9% similar) in 227 aa overlap (86-310:35-252)
60 70 80 90 100 110
pF1KB6 LPNRFDMNVCSRFVKSLNEEDSKNIQDQVNSDLEVASVLFKAECNIH-TSPSPGIQVRHV
:: : : :: :. . ..: : .:
XP_005 QPAEDLIQTQQTPASELGDPEDPGEEAADGSDTVVLS-LFP--CTPEPVNPEPDASV---
10 20 30 40 50
120 130 140 150 160 170
pF1KB6 YTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSVHQLAAQGEMLYLATRIEQ-EN
:. . : .:.::::::..::::::. : .:::.::::::::. : .... .:
XP_005 ---SSPQAGSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDN
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB6 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM
..:. ::.:::::.::.: :.: .:.:::. ::::..:.: :::::::: . :::::: .
XP_005 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB6 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY
::. ::.: :::::::::::::.:::::::. :: ::: : :.::::. :::::::::
XP_005 LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY
180 190 200 210 220 230
300 310
pF1KB6 RSVQQVIESHLLKLLQNIKE
:.::::::.:.:::.:.
XP_005 RKVQQVIENHILKLFQSNLVPADPE
240 250 260
>>XP_005260193 (OMIM: 209920,603200) PREDICTED: DNA-bind (259 aa)
initn: 872 init1: 613 opt: 791 Z-score: 612.6 bits: 121.2 E(85289): 2.2e-27
Smith-Waterman score: 791; 64.9% identity (85.6% similar) in 188 aa overlap (124-310:64-251)
100 110 120 130 140 150
pF1KB6 LFKAECNIHTSPSPGIQVRHVYTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSV
: .:.::::::..::::::. : .:::.
XP_005 GSDTVVLSLFPCTPEPVNPEPDASVSSPQGSSLKHSTTLTNRQRGNEVSALPATLDSLSI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 HQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG
::::::::. : .... .:..:. ::.:::::.::.: :.: .:.:::. ::::..:.
XP_005 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA
: :::::::: . :::::: .::. ::.: :::::::::::::.:::::::. :: ::
XP_005 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA
160 170 180 190 200 210
280 290 300 310
pF1KB6 DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE
: : :.::::. ::::::::::.::::::.:.:::.:.
XP_005 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADPE
220 230 240 250
>>XP_005260194 (OMIM: 209920,603200) PREDICTED: DNA-bind (259 aa)
initn: 872 init1: 613 opt: 791 Z-score: 612.6 bits: 121.2 E(85289): 2.2e-27
Smith-Waterman score: 791; 64.9% identity (85.6% similar) in 188 aa overlap (124-310:64-251)
100 110 120 130 140 150
pF1KB6 LFKAECNIHTSPSPGIQVRHVYTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSV
: .:.::::::..::::::. : .:::.
XP_005 GSDTVVLSLFPCTPEPVNPEPDASVSSPQGSSLKHSTTLTNRQRGNEVSALPATLDSLSI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 HQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG
::::::::. : .... .:..:. ::.:::::.::.: :.: .:.:::. ::::..:.
XP_005 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA
: :::::::: . :::::: .::. ::.: :::::::::::::.:::::::. :: ::
XP_005 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA
160 170 180 190 200 210
280 290 300 310
pF1KB6 DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE
: : :.::::. ::::::::::.::::::.:.:::.:.
XP_005 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADPE
220 230 240 250
>>XP_006722993 (OMIM: 209920,603200) PREDICTED: DNA-bind (259 aa)
initn: 872 init1: 613 opt: 791 Z-score: 612.6 bits: 121.2 E(85289): 2.2e-27
Smith-Waterman score: 791; 64.9% identity (85.6% similar) in 188 aa overlap (124-310:64-251)
100 110 120 130 140 150
pF1KB6 LFKAECNIHTSPSPGIQVRHVYTPSTTKHFSPIKQSTTLTNKHRGNEVSTTPLLANSLSV
: .:.::::::..::::::. : .:::.
XP_006 GSDTVVLSLFPCTPEPVNPEPDASVSSPQGSSLKHSTTLTNRQRGNEVSALPATLDSLSI
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 HQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG
::::::::. : .... .:..:. ::.:::::.::.: :.: .:.:::. ::::..:.
XP_006 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 KGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA
: :::::::: . :::::: .::. ::.: :::::::::::::.:::::::. :: ::
XP_006 KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA
160 170 180 190 200 210
280 290 300 310
pF1KB6 DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE
: : :.::::. ::::::::::.::::::.:.:::.:.
XP_006 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADPE
220 230 240 250
313 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:16:27 2016 done: Sat Nov 5 08:16:28 2016
Total Scan time: 7.120 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]