FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6434, 344 aa
  1>>>pF1KB6434 344 - 344 aa - 344 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2696+/-0.000887; mu= 16.1714+/- 0.053
 mean_var=63.4620+/-12.824, 0's: 0 Z-trim(106.0): 10  B-trim: 0 in 0/50
 Lambda= 0.160997
 statistics sampled from 8727 (8730) to 8727 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS33220.2 NAGK gene_id:55577|Hs108|chr2          ( 390) 2311 545.5 2.7e-155
CCDS82466.1 NAGK gene_id:55577|Hs108|chr2          ( 293) 1979 468.3 3.5e-132


>>CCDS33220.2 NAGK gene_id:55577|Hs108|chr2               (390 aa)
 initn: 2311 init1: 2311 opt: 2311  Z-score: 2901.5  bits: 545.5 E(32554): 2.7e-155
Smith-Waterman score: 2311; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:47-390)

                                             10        20        30
pF1KB6                               MAAIYGGVEGGGTRSEVLLVSEDGKILAEA
                                     ::::::::::::::::::::::::::::::
CCDS33 SGAVPRQLEGRRCQAGRDANGGTSSDGSSSMAAIYGGVEGGGTRSEVLLVSEDGKILAEA
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KB6 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEE
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KB6 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMM
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KB6 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDK
        200       210       220       230       240       250      

              220       230       240       250       260       270
pF1KB6 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVG
        260       270       280       290       300       310      

              280       290       300       310       320       330
pF1KB6 SVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMD
        320       330       340       350       360       370      

              340    
pF1KB6 YSANAIAFYSYTFS
       ::::::::::::::
CCDS33 YSANAIAFYSYTFS
        380       390

>>CCDS82466.1 NAGK gene_id:55577|Hs108|chr2               (293 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2486.6  bits: 468.3 E(32554): 3.5e-132
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 293 aa overlap (52-344:1-293)

              30        40        50        60        70        80 
pF1KB6 EDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                     ::::::::::::::::::::::::::::::
CCDS82                               MVNRAKRKAGVDPLVPLRSLGLSLSGGDQE
                                             10        20        30

              90       100       110       120       130       140 
pF1KB6 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSES
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KB6 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGIL
              100       110       120       130       140       150

             210       220       230       240       250       260 
pF1KB6 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 THLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGK
              160       170       180       190       200       210

             270       280       290       300       310       320 
pF1KB6 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR
              220       230       240       250       260       270

             330       340    
pF1KB6 HIGHLLPMDYSANAIAFYSYTFS
       :::::::::::::::::::::::
CCDS82 HIGHLLPMDYSANAIAFYSYTFS
              280       290   




344 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:58:51 2016 done: Fri Nov  4 22:58:52 2016
 Total Scan time:  2.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]