Result of FASTA (omim) for
pF1KB6425
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6425, 310 aa
1>>>pF1KB6425 310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5212+/-0.000339; mu= -3.3470+/- 0.021
mean_var=212.8863+/-43.835, 0's: 0 Z-trim(121.5): 41 B-trim: 2059 in 1/58
Lambda= 0.087902
statistics sampled from 38189 (38230) to 38189 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.448), width: 16
Scan time: 6.410
The best scores are: opt bits E(85289)
NP_001006947 (OMIM: 186355) syndecan-1 precursor [ ( 310) 2052 272.3 9e-73
NP_002988 (OMIM: 186355) syndecan-1 precursor [Hom ( 310) 2052 272.3 9e-73
XP_005262677 (OMIM: 186355) PREDICTED: syndecan-1 ( 334) 1899 252.9 6.6e-67
XP_005262678 (OMIM: 186355) PREDICTED: syndecan-1 ( 305) 1892 252.0 1.1e-66
XP_005262679 (OMIM: 186355) PREDICTED: syndecan-1 ( 292) 1887 251.3 1.7e-66
XP_011540768 (OMIM: 186357,601665) PREDICTED: synd ( 400) 343 55.6 1.9e-07
XP_011540766 (OMIM: 186357,601665) PREDICTED: synd ( 430) 343 55.6 2.1e-07
XP_011540765 (OMIM: 186357,601665) PREDICTED: synd ( 431) 343 55.6 2.1e-07
NP_055469 (OMIM: 186357,601665) syndecan-3 precurs ( 442) 343 55.6 2.1e-07
XP_011515514 (OMIM: 142460) PREDICTED: syndecan-2 ( 172) 229 40.9 0.0022
NP_002989 (OMIM: 142460) syndecan-2 precursor [Hom ( 201) 229 41.0 0.0025
XP_011527279 (OMIM: 600017) PREDICTED: syndecan-4 ( 126) 214 39.0 0.0062
NP_002990 (OMIM: 600017) syndecan-4 precursor [Hom ( 198) 214 39.1 0.009
>>NP_001006947 (OMIM: 186355) syndecan-1 precursor [Homo (310 aa)
initn: 2052 init1: 2052 opt: 2052 Z-score: 1427.5 bits: 272.3 E(85289): 9e-73
Smith-Waterman score: 2052; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
250 260 270 280 290 300
310
pF1KB6 KPTKQEEFYA
::::::::::
NP_001 KPTKQEEFYA
310
>>NP_002988 (OMIM: 186355) syndecan-1 precursor [Homo sa (310 aa)
initn: 2052 init1: 2052 opt: 2052 Z-score: 1427.5 bits: 272.3 E(85289): 9e-73
Smith-Waterman score: 2052; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
250 260 270 280 290 300
310
pF1KB6 KPTKQEEFYA
::::::::::
NP_002 KPTKQEEFYA
310
>>XP_005262677 (OMIM: 186355) PREDICTED: syndecan-1 isof (334 aa)
initn: 1899 init1: 1899 opt: 1899 Z-score: 1322.2 bits: 252.9 E(85289): 6.6e-67
Smith-Waterman score: 1899; 99.3% identity (99.7% similar) in 290 aa overlap (21-310:45-334)
10 20 30 40 50
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAG
.:::::::::::::::::::::::::::::
XP_005 PSLPHLELSLGGGGAAGEGRAESLDESEAMIPQIVATNLPPEDQDGSGDDSDNFSGSGAG
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 ALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ALQDITLSQQTPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEV
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 EPGLTAREQEATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGP
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_005 EPGLTAREQEATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGP
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 SQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRR
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB6 NQSPVDQGATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NQSPVDQGATGASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEE
260 270 280 290 300 310
300 310
pF1KB6 PKQANGGAYQKPTKQEEFYA
::::::::::::::::::::
XP_005 PKQANGGAYQKPTKQEEFYA
320 330
>>XP_005262678 (OMIM: 186355) PREDICTED: syndecan-1 isof (305 aa)
initn: 1892 init1: 1892 opt: 1892 Z-score: 1317.9 bits: 252.0 E(85289): 1.1e-66
Smith-Waterman score: 1892; 99.0% identity (99.3% similar) in 291 aa overlap (20-310:15-305)
10 20 30 40 50 60
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
.: ::::::::::::::::::::::::::::::::::::::
XP_005 MTVYCRWAMVDCDCSLQQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
240 250 260 270 280 290
310
pF1KB6 KPTKQEEFYA
::::::::::
XP_005 KPTKQEEFYA
300
>>XP_005262679 (OMIM: 186355) PREDICTED: syndecan-1 isof (292 aa)
initn: 1887 init1: 1887 opt: 1887 Z-score: 1314.8 bits: 251.3 E(85289): 1.7e-66
Smith-Waterman score: 1887; 99.7% identity (99.7% similar) in 288 aa overlap (23-310:5-292)
10 20 30 40 50 60
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
::::::::::::::::::::::::::::::::::::::
XP_005 MGDEQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
XP_005 ATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
230 240 250 260 270 280
310
pF1KB6 KPTKQEEFYA
::::::::::
XP_005 KPTKQEEFYA
290
>>XP_011540768 (OMIM: 186357,601665) PREDICTED: syndecan (400 aa)
initn: 300 init1: 213 opt: 343 Z-score: 254.5 bits: 55.6 E(85289): 1.9e-07
Smith-Waterman score: 399; 33.6% identity (58.0% similar) in 324 aa overlap (16-310:93-400)
10 20 30 40
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
.:.:: .:.:..: : .. . : ...
XP_011 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
70 80 90 100 110 120
50 60 70 80 90
pF1KB6 GSGAGALQD-------ITLSQQTPSTWKDTQLL--TAIPTSPE-----PTGLEATAASTS
..: . : :.. :::: . ::. . : : ..:.. .
XP_011 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
130 140 150 160 170 180
100 110 120 130 140
pF1KB6 TLPAGEGPKEGEAVVLPEVE-PGLTAR---EQEATPRPRETTQLPTTHQASTTT-ATTAQ
: : . .: ::. :. : :.. . .: ::: ::: : . :: .:::
XP_011 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP-ATTQEPDIPERSTLPLGTTAP
190 200 210 220 230 240
150 160 170 180 190
pF1KB6 EPA----TSHPHRDMQPGHHETSTPA--GPSQADLHTPHTEDGGP-SATERAAEDGASSQ
:. : :. . . : .:. ::: .:.. :. : : .:.: .: ::...
XP_011 GPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAK
250 260 270 280 290 300
200 210 220 230 240 250
pF1KB6 LPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGV
. :. . : . : ... .:.:...:. ...:.::::: .:
XP_011 ASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAV
310 320 330 340
260 270 280 290 300 310
pF1KB6 IAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
:.::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
XP_011 IVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
350 360 370 380 390 400
>>XP_011540766 (OMIM: 186357,601665) PREDICTED: syndecan (430 aa)
initn: 300 init1: 213 opt: 343 Z-score: 254.1 bits: 55.6 E(85289): 2.1e-07
Smith-Waterman score: 399; 33.6% identity (58.0% similar) in 324 aa overlap (16-310:123-430)
10 20 30 40
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
.:.:: .:.:..: : .. . : ...
XP_011 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
100 110 120 130 140 150
50 60 70 80 90
pF1KB6 GSGAGALQD-------ITLSQQTPSTWKDTQLL--TAIPTSPE-----PTGLEATAASTS
..: . : :.. :::: . ::. . : : ..:.. .
XP_011 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
160 170 180 190 200 210
100 110 120 130 140
pF1KB6 TLPAGEGPKEGEAVVLPEVE-PGLTAR---EQEATPRPRETTQLPTTHQASTTT-ATTAQ
: : . .: ::. :. : :.. . .: ::: ::: : . :: .:::
XP_011 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP-ATTQEPDIPERSTLPLGTTAP
220 230 240 250 260 270
150 160 170 180 190
pF1KB6 EPA----TSHPHRDMQPGHHETSTPA--GPSQADLHTPHTEDGGP-SATERAAEDGASSQ
:. : :. . . : .:. ::: .:.. :. : : .:.: .: ::...
XP_011 GPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAK
280 290 300 310 320 330
200 210 220 230 240 250
pF1KB6 LPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGV
. :. . : . : ... .:.:...:. ...:.::::: .:
XP_011 ASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAV
340 350 360 370
260 270 280 290 300 310
pF1KB6 IAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
:.::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
XP_011 IVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
380 390 400 410 420 430
>>XP_011540765 (OMIM: 186357,601665) PREDICTED: syndecan (431 aa)
initn: 300 init1: 213 opt: 343 Z-score: 254.0 bits: 55.6 E(85289): 2.1e-07
Smith-Waterman score: 399; 33.6% identity (58.0% similar) in 324 aa overlap (16-310:124-431)
10 20 30 40
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
.:.:: .:.:..: : .. . : ...
XP_011 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
100 110 120 130 140 150
50 60 70 80 90
pF1KB6 GSGAGALQD-------ITLSQQTPSTWKDTQLL--TAIPTSPE-----PTGLEATAASTS
..: . : :.. :::: . ::. . : : ..:.. .
XP_011 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
160 170 180 190 200 210
100 110 120 130 140
pF1KB6 TLPAGEGPKEGEAVVLPEVE-PGLTAR---EQEATPRPRETTQLPTTHQASTTT-ATTAQ
: : . .: ::. :. : :.. . .: ::: ::: : . :: .:::
XP_011 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP-ATTQEPDIPERSTLPLGTTAP
220 230 240 250 260 270
150 160 170 180 190
pF1KB6 EPA----TSHPHRDMQPGHHETSTPA--GPSQADLHTPHTEDGGP-SATERAAEDGASSQ
:. : :. . . : .:. ::: .:.. :. : : .:.: .: ::...
XP_011 GPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAK
280 290 300 310 320 330
200 210 220 230 240 250
pF1KB6 LPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGV
. :. . : . : ... .:.:...:. ...:.::::: .:
XP_011 ASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAV
340 350 360 370
260 270 280 290 300 310
pF1KB6 IAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
:.::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
XP_011 IVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
380 390 400 410 420 430
>>NP_055469 (OMIM: 186357,601665) syndecan-3 precursor [ (442 aa)
initn: 300 init1: 213 opt: 343 Z-score: 253.9 bits: 55.6 E(85289): 2.1e-07
Smith-Waterman score: 399; 33.6% identity (58.0% similar) in 324 aa overlap (16-310:135-442)
10 20 30 40
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
.:.:: .:.:..: : .. . : ...
NP_055 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
110 120 130 140 150 160
50 60 70 80 90
pF1KB6 GSGAGALQD-------ITLSQQTPSTWKDTQLL--TAIPTSPE-----PTGLEATAASTS
..: . : :.. :::: . ::. . : : ..:.. .
NP_055 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
170 180 190 200 210 220
100 110 120 130 140
pF1KB6 TLPAGEGPKEGEAVVLPEVE-PGLTAR---EQEATPRPRETTQLPTTHQASTTT-ATTAQ
: : . .: ::. :. : :.. . .: ::: ::: : . :: .:::
NP_055 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP-ATTQEPDIPERSTLPLGTTAP
230 240 250 260 270 280
150 160 170 180 190
pF1KB6 EPA----TSHPHRDMQPGHHETSTPA--GPSQADLHTPHTEDGGP-SATERAAEDGASSQ
:. : :. . . : .:. ::: .:.. :. : : .:.: .: ::...
NP_055 GPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAK
290 300 310 320 330 340
200 210 220 230 240 250
pF1KB6 LPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGV
. :. . : . : ... .:.:...:. ...:.::::: .:
NP_055 ASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAV
350 360 370 380
260 270 280 290 300 310
pF1KB6 IAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
:.::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
NP_055 IVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
390 400 410 420 430 440
>>XP_011515514 (OMIM: 142460) PREDICTED: syndecan-2 isof (172 aa)
initn: 292 init1: 193 opt: 229 Z-score: 181.9 bits: 40.9 E(85289): 0.0022
Smith-Waterman score: 229; 40.7% identity (72.0% similar) in 118 aa overlap (198-310:66-172)
170 180 190 200 210 220
pF1KB6 AGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEP
...:: : : ::. :. : .
XP_011 SPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPE-----ETDKEK---VHLSD
40 50 60 70 80
230 240 250 260 270 280
pF1KB6 DRRNQSPVDQGAT----GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDE
..:...:... .. :..:. : :::..:::::..:..::. :. ...:::.::::
XP_011 SERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDE
90 100 110 120 130 140
290 300 310
pF1KB6 GSYSLEEPKQANGGAYQK-PTKQEEFYA
:::.: : .. ...:::: ::: ::::
XP_011 GSYDLGE-RKPSSAAYQKAPTK--EFYA
150 160 170
310 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:12:55 2016 done: Sat Nov 5 01:12:56 2016
Total Scan time: 6.410 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]