FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6425, 310 aa
  1>>>pF1KB6425 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8070+/-0.000873; mu= 1.0364+/- 0.053
 mean_var=201.6017+/-41.862, 0's: 0 Z-trim(114.0): 7  B-trim: 196 in 2/51
 Lambda= 0.090329
 statistics sampled from 14605 (14609) to 14605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.449), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS1697.1 SDC1 gene_id:6382|Hs108|chr2            ( 310) 2043 278.1 6.2e-75


>>CCDS1697.1 SDC1 gene_id:6382|Hs108|chr2                 (310 aa)
 initn: 2043 init1: 2043 opt: 2043  Z-score: 1458.8  bits: 278.1 E(32554): 6.2e-75
Smith-Waterman score: 2043; 99.7% identity (99.7% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KB6 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 TPSTWKDTQLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEPGLTAREQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ATPRPRETTQLPTTHLASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
              250       260       270       280       290       300

              310
pF1KB6 KPTKQEEFYA
       ::::::::::
CCDS16 KPTKQEEFYA
              310




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:12:54 2016 done: Sat Nov  5 01:12:55 2016
 Total Scan time:  2.720 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]