Result of FASTA (omim) for
pF1KB6422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6422, 339 aa
1>>>pF1KB6422 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4634+/-0.000461; mu= 14.4861+/- 0.028
mean_var=59.9439+/-11.805, 0's: 0 Z-trim(107.9): 78 B-trim: 0 in 0/51
Lambda= 0.165654
statistics sampled from 15850 (15934) to 15850 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.542), E-opt: 0.2 (0.187), width: 16
Scan time: 7.510
The best scores are: opt bits E(85289)
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
NP_002866 (OMIM: 114480,179617,614508) DNA repair ( 339) 2175 528.8 6.4e-150
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 2175 528.8 6.4e-150
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340) 1900 463.1 3.9e-130
NP_597994 (OMIM: 114480,179617,614508) DNA repair ( 340) 1900 463.1 3.9e-130
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 1642 401.4 1.2e-111
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 1642 401.4 1.2e-111
XP_011520164 (OMIM: 114480,179617,614508) PREDICTE ( 215) 1401 343.8 2.1e-94
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 1108 273.8 3.7e-73
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 1005 249.2 1e-65
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 1005 249.2 1e-65
XP_016884031 (OMIM: 602721) PREDICTED: meiotic rec ( 271) 538 137.5 3.1e-32
XP_006724175 (OMIM: 602721) PREDICTED: meiotic rec ( 285) 517 132.5 1.1e-30
NP_001265137 (OMIM: 602721) meiotic recombination ( 285) 517 132.5 1.1e-30
XP_011528140 (OMIM: 602721) PREDICTED: meiotic rec ( 293) 435 112.9 8.5e-25
XP_011528139 (OMIM: 602721) PREDICTED: meiotic rec ( 307) 412 107.4 4e-23
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair ( 258) 260 71.1 3e-12
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair ( 274) 260 71.1 3.1e-12
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347) 260 71.1 3.9e-12
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347) 260 71.1 3.9e-12
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347) 260 71.1 3.9e-12
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348) 260 71.1 3.9e-12
NP_598194 (OMIM: 602948) DNA repair protein RAD51 ( 350) 260 71.1 3.9e-12
NP_002868 (OMIM: 602948) DNA repair protein RAD51 ( 350) 260 71.1 3.9e-12
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351) 260 71.1 3.9e-12
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351) 260 71.1 3.9e-12
NP_598193 (OMIM: 602948) DNA repair protein RAD51 ( 384) 260 71.1 4.2e-12
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425) 260 71.2 4.7e-12
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair ( 500) 260 71.2 5.4e-12
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332) 245 67.5 4.5e-11
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 242 66.8 7.3e-11
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 219 61.3 3.5e-09
NP_005422 (OMIM: 600375) DNA repair protein XRCC2 ( 280) 197 56.0 1.1e-07
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346) 195 55.6 1.8e-07
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346) 195 55.6 1.8e-07
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346) 195 55.6 1.8e-07
NP_005423 (OMIM: 114480,600675,613972) DNA repair ( 346) 195 55.6 1.8e-07
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346) 195 55.6 1.8e-07
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342) 190 54.4 4.2e-07
NP_478123 (OMIM: 189960,602774,613390,613399) DNA ( 376) 190 54.4 4.5e-07
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377) 190 54.4 4.5e-07
XP_016880408 (OMIM: 189960,602774,613390,613399) P ( 225) 153 45.5 0.00013
XP_016880406 (OMIM: 189960,602774,613390,613399) P ( 259) 153 45.5 0.00015
XP_016880403 (OMIM: 189960,602774,613390,613399) P ( 259) 153 45.5 0.00015
XP_016880404 (OMIM: 189960,602774,613390,613399) P ( 259) 153 45.5 0.00015
XP_016880407 (OMIM: 189960,602774,613390,613399) P ( 259) 153 45.5 0.00015
XP_016880405 (OMIM: 189960,602774,613390,613399) P ( 259) 153 45.5 0.00015
>>XP_011520159 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2812.5 bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>XP_011520162 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2812.5 bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>NP_002866 (OMIM: 114480,179617,614508) DNA repair prot (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2812.5 bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
NP_002 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>XP_011520160 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2812.5 bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>XP_011520161 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2812.5 bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
XP_011 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>XP_006720689 (OMIM: 114480,179617,614508) PREDICTED: D (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2812.5 bits: 528.8 E(85289): 6.4e-150
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
XP_006 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>NP_001157741 (OMIM: 114480,179617,614508) DNA repair p (340 aa)
initn: 1929 init1: 1462 opt: 1900 Z-score: 2457.3 bits: 463.1 E(85289): 3.9e-130
Smith-Waterman score: 1900; 89.1% identity (92.9% similar) in 340 aa overlap (1-339:1-340)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQR-RSEIIQITTGSKELDKLLQGGIET
:::::::::::::::.:. ... . ... . : . . .: :::::
NP_001 INIKGISEAKADKILTESRSVARLECNSVILVYCTLRLSGSSDSPASASRVVGTTGGIET
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
250 260 270 280 290 300
300 310 320 330
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
::::::::::::::::::::::::::::::::::::::::
NP_001 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330 340
>>NP_597994 (OMIM: 114480,179617,614508) DNA repair prot (340 aa)
initn: 1929 init1: 1462 opt: 1900 Z-score: 2457.3 bits: 463.1 E(85289): 3.9e-130
Smith-Waterman score: 1900; 89.1% identity (92.9% similar) in 340 aa overlap (1-339:1-340)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQR-RSEIIQITTGSKELDKLLQGGIET
:::::::::::::::.:. ... . ... . : . . .: :::::
NP_597 INIKGISEAKADKILTESRSVARLECNSVILVYCTLRLSGSSDSPASASRVVGTTGGIET
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_597 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
250 260 270 280 290 300
300 310 320 330
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
::::::::::::::::::::::::::::::::::::::::
NP_597 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330 340
>>XP_011520163 (OMIM: 114480,179617,614508) PREDICTED: D (280 aa)
initn: 1642 init1: 1642 opt: 1642 Z-score: 2125.4 bits: 401.4 E(85289): 1.2e-111
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::
XP_011 RQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS
250 260 270 280
>>NP_001157742 (OMIM: 114480,179617,614508) DNA repair p (280 aa)
initn: 1642 init1: 1642 opt: 1642 Z-score: 2125.4 bits: 401.4 E(85289): 1.2e-111
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::
NP_001 RQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS
250 260 270 280
339 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:48:21 2016 done: Fri Nov 4 16:48:22 2016
Total Scan time: 7.510 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]