Result of FASTA (ccds) for
pF1KB6422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6422, 339 aa
1>>>pF1KB6422 339 - 339 aa - 339 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6788+/-0.00104; mu= 13.0570+/- 0.062
mean_var=55.8521+/-11.201, 0's: 0 Z-trim(101.4): 29 B-trim: 0 in 0/49
Lambda= 0.171615
statistics sampled from 6465 (6487) to 6465 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.567), E-opt: 0.2 (0.199), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15 ( 339) 2175 547.0 7.8e-156
CCDS53931.1 RAD51 gene_id:5888|Hs108|chr15 ( 340) 1900 479.0 2.5e-135
CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15 ( 280) 1642 415.1 3.5e-116
CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22 ( 340) 1108 282.9 2.6e-76
CCDS63477.1 DMC1 gene_id:11144|Hs108|chr22 ( 285) 517 136.5 2.5e-32
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 ( 350) 260 72.9 4.3e-13
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 ( 384) 260 72.9 4.7e-13
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 ( 425) 260 72.9 5.2e-13
CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17 ( 328) 242 68.5 8.9e-12
>>CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15 (339 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2911.1 bits: 547.0 E(32554): 7.8e-156
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
250 260 270 280 290 300
310 320 330
pF1KB6 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
:::::::::::::::::::::::::::::::::::::::
CCDS10 YLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330
>>CCDS53931.1 RAD51 gene_id:5888|Hs108|chr15 (340 aa)
initn: 1929 init1: 1462 opt: 1900 Z-score: 2543.2 bits: 479.0 E(32554): 2.5e-135
Smith-Waterman score: 1900; 89.1% identity (92.9% similar) in 340 aa overlap (1-339:1-340)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQR-RSEIIQITTGSKELDKLLQGGIET
:::::::::::::::.:. ... . ... . : . . .: :::::
CCDS53 INIKGISEAKADKILTESRSVARLECNSVILVYCTLRLSGSSDSPASASRVVGTTGGIET
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR
250 260 270 280 290 300
300 310 320 330
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
::::::::::::::::::::::::::::::::::::::::
CCDS53 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
310 320 330 340
>>CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15 (280 aa)
initn: 1642 init1: 1642 opt: 1642 Z-score: 2199.4 bits: 415.1 E(32554): 3.5e-116
Smith-Waterman score: 1642; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRL
::::::::::::::::::
CCDS53 RQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS
250 260 270 280
>>CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22 (340 aa)
initn: 1161 init1: 615 opt: 1108 Z-score: 1483.4 bits: 282.9 E(32554): 2.6e-76
Smith-Waterman score: 1108; 55.0% identity (79.5% similar) in 327 aa overlap (16-339:16-340)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
CCDS13 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
CCDS13 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
.::: ::::::::::. ::: :: ::: : :: ..::::.::::.:: .:.:...
CCDS13 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV
120 130 140 150 160 170
190 200 210 220 230
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLL-YQASAMMVESR-YALLIVDSATALYRTDYSGRGEL
. . ::::: ::::....:: .:: : :. . :. . :::.:: ::.:.:.::::::
CCDS13 DHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 SARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHAST
. ::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::
CCDS13 AERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHAST
240 250 260 270 280 290
300 310 320 330
pF1KB6 TRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
::. ::::::: :: :::::: .:: :: :::.: :.::::.
CCDS13 TRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
300 310 320 330 340
>>CCDS63477.1 DMC1 gene_id:11144|Hs108|chr22 (285 aa)
initn: 911 init1: 497 opt: 517 Z-score: 693.9 bits: 136.5 E(32554): 2.5e-32
Smith-Waterman score: 813; 46.5% identity (67.4% similar) in 325 aa overlap (16-339:16-285)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
::::. : :. :.. :::. :.:::. .:. :.... .. .. :
CCDS63 MKEDQVVAEEPGFQDEEESLF-QDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETG
:.::.::::.::: : ::. :: :: :. ..:. ...:::::.:.:::: ::::.
CCDS63 CNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGL
.::: ::::::::::. ::: : :: . .: :: ..
CCDS63 AITEAFGEFRTGKTQLSHTL---C--------GEHQMELLDY-----------VAAKF--
120 130 140 150
190 200 210 220 230 240
pF1KB6 SGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA
:. ... :::.:: ::.:.:.::::::.
CCDS63 ------------------HEEAGIFK-----------LLIIDSIMALFRVDFSGRGELAE
160 170 180
250 260 270 280 290
pF1KB6 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAM-FAADPKKPIGGNIIAHASTTR
::..::..: : ....:..::: .:::..:. ::.: : :::::::::.:.:::::::
CCDS63 RQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD-PGATMTFQADPKKPIGGHILAHASTTR
190 200 210 220 230 240
300 310 320 330
pF1KB6 LYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
. ::::::: :: :::::: .:: :: :::.: :.::::.
CCDS63 ISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGDAKE
250 260 270 280
>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 (350 aa)
initn: 356 init1: 211 opt: 260 Z-score: 348.5 bits: 72.9 E(32554): 4.3e-13
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (27-334:5-342)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
.:.. :.. . .: . . : . ::
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
10 20 30
70 80 90 100 110
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
... :.: . ..: ... . :: .. .:: .. ..: . ::. :.::.
CCDS97 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
::.::. : ::::.: ... :: . :: :: ..:::::..: :::. .::
CCDS97 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
:: . .: ..: : .. :. : . . .. . :.:.::.... :
CCDS97 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
160 170 180 190 200 210
240 250 260 270 280
pF1KB6 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
..... :.:. :. ::: : ::.::.. :..:::......:: :: .:
CCDS97 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
220 230 240 250 260 270
290 300 310 320 330
pF1KB6 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
:: .:. .::: :. .: : : :: : . ...:.
CCDS97 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
280 290 300 310 320 330
pF1KB6 ADGVGDAKD
.:.
CCDS97 EEGLVLQGQEKP
340 350
>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 (384 aa)
initn: 356 init1: 211 opt: 260 Z-score: 347.8 bits: 72.9 E(32554): 4.7e-13
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (27-334:5-342)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
.:.. :.. . .: . . : . ::
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
10 20 30
70 80 90 100 110
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
... :.: . ..: ... . :: .. .:: .. ..: . ::. :.::.
CCDS97 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
::.::. : ::::.: ... :: . :: :: ..:::::..: :::. .::
CCDS97 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
:: . .: ..: : .. :. : . . .. . :.:.::.... :
CCDS97 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
160 170 180 190 200 210
240 250 260 270 280
pF1KB6 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
..... :.:. :. ::: : ::.::.. :..:::......:: :: .:
CCDS97 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
220 230 240 250 260 270
290 300 310 320 330
pF1KB6 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
:: .:. .::: :. .: : : :: : . ...:.
CCDS97 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
280 290 300 310 320 330
pF1KB6 ADGVGDAKD
.:.
CCDS97 EEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
340 350 360 370 380
>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 (425 aa)
initn: 356 init1: 211 opt: 260 Z-score: 347.0 bits: 72.9 E(32554): 5.2e-13
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (27-334:5-342)
10 20 30 40 50 60
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
.:.. :.. . .: . . : . ::
CCDS81 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
10 20 30
70 80 90 100 110
pF1KB6 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
... :.: . ..: ... . :: .. .:: .. ..: . ::. :.::.
CCDS81 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
::.::. : ::::.: ... :: . :: :: ..:::::..: :::. .::
CCDS81 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
:: . .: ..: : .. :. : . . .. . :.:.::.... :
CCDS81 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
160 170 180 190 200 210
240 250 260 270 280
pF1KB6 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
..... :.:. :. ::: : ::.::.. :..:::......:: :: .:
CCDS81 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
220 230 240 250 260 270
290 300 310 320 330
pF1KB6 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
:: .:. .::: :. .: : : :: : . ...:.
CCDS81 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
280 290 300 310 320 330
pF1KB6 ADGVGDAKD
.:.
CCDS81 EEGLVLQVVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMH
340 350 360 370 380 390
>>CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17 (328 aa)
initn: 161 init1: 119 opt: 242 Z-score: 324.9 bits: 68.5 E(32554): 8.9e-12
Smith-Waterman score: 242; 25.0% identity (56.4% similar) in 296 aa overlap (25-307:3-283)
10 20 30 40 50
pF1KB6 MAMQMQLEANADTSVEEESFGPQPISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKE
. :. : :.. . .. :. ..:: .. : .:
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEE
10 20 30
60 70 80 90 100 110
pF1KB6 LINIKGISEAKADKILAEA--AKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGI
. . :.: :: : .. :.. . . : ... .. ..:: :::::..:.
CCDS11 VAQKCGLSY-KALVALRRVLLAQFSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGL
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER
:: .::. : .::::.: .:.. : . ...:.:..: . ::: . .
CCDS11 YTGEVTEIVGGPGSGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQA
100 110 120 130 140 150
180 190 200 210 220
pF1KB6 YGLS---GSDVLDNVAYARAFNTDHQTQLLYQASAMMVES------RYALLIVDSATALY
. ...: . ..::. .. ..: . . .... ...:::.::.
CCDS11 KTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB6 RTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPI
.:. : : .:.::: :. : : ..:.:::.::... . :.. . ::
CCDS11 SPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSGRL------KPA
220 230 240 250 260
290 300 310 320 330
pF1KB6 GGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDAKD
: . . .::. : .:
CCDS11 LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATL
270 280 290 300 310 320
339 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:48:20 2016 done: Fri Nov 4 16:48:21 2016
Total Scan time: 2.520 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]