FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6414, 335 aa
  1>>>pF1KB6414 335 - 335 aa - 335 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7413+/-0.000923; mu= 13.5184+/- 0.055
 mean_var=68.3749+/-13.589, 0's: 0 Z-trim(105.5): 49  B-trim: 0 in 0/51
 Lambda= 0.155105
 statistics sampled from 8438 (8477) to 8438 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.26), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS7661.1 GLRX3 gene_id:10539|Hs108|chr10         ( 335) 2191 499.3 1.8e-141
CCDS9936.1 GLRX5 gene_id:51218|Hs108|chr14         ( 157)  323 81.2 6.1e-16


>>CCDS7661.1 GLRX3 gene_id:10539|Hs108|chr10              (335 aa)
 initn: 2191 init1: 2191 opt: 2191  Z-score: 2653.5  bits: 499.3 E(32554): 1.8e-141
Smith-Waterman score: 2191; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB6 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAAGAAEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWP
              250       260       270       280       290       300

              310       320       330     
pF1KB6 TYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
       :::::::::::::::::::::::::::::::::::
CCDS76 TYPQLYVKGELVGGLDIVKELKENGELLPILRGEN
              310       320       330     

>>CCDS9936.1 GLRX5 gene_id:51218|Hs108|chr14              (157 aa)
 initn: 318 init1: 179 opt: 323  Z-score: 399.7  bits: 81.2 E(32554): 6.1e-16
Smith-Waterman score: 323; 45.4% identity (82.5% similar) in 97 aa overlap (237-332:43-139)

        210       220       230       240       250       260      
pF1KB6 GELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQ
                                     :.: .:..: .:..:.::. .. .::::. 
CCDS99 LRWGRGAGGGGLWGPGVRAAGSGAGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNA
             20        30        40        50        60        70  

        270        280       290       300       310       320     
pF1KB6 ILEILNSTGV-EYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENG
       ...::   :: .: ....:.: :.:::.: :::::: ::.:..::.::: ::. ....::
CCDS99 VVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNG
             80        90       100       110       120       130  

         330                    
pF1KB6 ELLPILRGEN               
       .:.  :.                  
CCDS99 DLVEELKKLGIHSALLDEKKDQDSK
            140       150       




335 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:55:46 2016 done: Fri Nov  4 22:55:46 2016
 Total Scan time:  2.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]