FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6413, 308 aa
  1>>>pF1KB6413 308 - 308 aa - 308 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6498+/-0.000914; mu= 13.6658+/- 0.055
 mean_var=67.9171+/-13.665, 0's: 0 Z-trim(106.1): 40  B-trim: 366 in 1/49
 Lambda= 0.155627
 statistics sampled from 8750 (8787) to 8750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.27), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS30639.1 LDLRAP1 gene_id:26119|Hs108|chr1       ( 308) 2004 458.9 2.3e-129
CCDS58742.1 GULP1 gene_id:51454|Hs108|chr2         ( 291)  292 74.5 1.1e-13
CCDS2295.1 GULP1 gene_id:51454|Hs108|chr2          ( 304)  292 74.5 1.2e-13


>>CCDS30639.1 LDLRAP1 gene_id:26119|Hs108|chr1            (308 aa)
 initn: 2004 init1: 2004 opt: 2004  Z-score: 2436.0  bits: 458.9 E(32554): 2.3e-129
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB6 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGMLFSLKYLGMTLVEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PKGEELSAAAIKRIVATAKASGKKLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PKGEELSAAAIKRIVATAKASGKKLQKVTLKVSPRGIILTDNLTNQLIENVSIYRISYCT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAFEFWQVSKEEKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KRDKASQEGGDVLGARQDCTPSLKSLVATGNLLDLEETAKAPLSTVSANTTNMDEVPRPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KRDKASQEGGDVLGARQDCTPSLKSLVATGNLLDLEETAKAPLSTVSANTTNMDEVPRPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ALSGSSVVWELDDGLDEAFSRLAQSRTNPQVLDTGLTAQDMHYAQCLSPVDWDKPDSSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ALSGSSVVWELDDGLDEAFSRLAQSRTNPQVLDTGLTAQDMHYAQCLSPVDWDKPDSSGT
              250       260       270       280       290       300

               
pF1KB6 EQDDLFSF
       ::::::::
CCDS30 EQDDLFSF
               

>>CCDS58742.1 GULP1 gene_id:51454|Hs108|chr2              (291 aa)
 initn: 190 init1:  85 opt: 292  Z-score: 359.1  bits: 74.5 E(32554): 1.1e-13
Smith-Waterman score: 292; 25.6% identity (62.1% similar) in 211 aa overlap (29-234:7-215)

               10        20        30        40         50         
pF1KB6 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGML-FSLKYLGMTLVE
                                   ::  ..:  : :.: . .. .. :.:: : ::
CCDS58                       MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVE
                                     10        20        30        

      60        70           80        90       100       110      
pF1KB6 QPKGEELSAAAIKRIVAT---AKASGKKLQKVTLKVSPRGIILTDNLTNQLIENVSIYRI
       :::: :.   :....  .    :. :.:. :: :..:  :. . .  :... .: ...::
CCDS58 QPKGTEVVRDAVRKLKFARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRI
       40        50        60        70        80        90        

        120       130       140       150       160        170     
pF1KB6 SYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAF-EFWQVS
       :.:. ::   ..:..: .......  :..:   ..: :. .:::..::: .:. .: . .
CCDS58 SFCADDKTDKRIFTFICKDSESNKHLCYVF--DSEKCAEEITLTIGQAFDLAYRKFLESG
      100       110       120         130       140       150      

         180       190       200       210       220       230     
pF1KB6 KEEKEKRDKASQEGGDVLGARQDCTPSLKSLVATGNLLDLEETAKAPLSTVSANTTNMDE
        .. : : . .     .   . .     ...    : : . ...  : .... .. . : 
CCDS58 GKDVETRKQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDI
        160       170       180       190       200       210      

         240       250       260       270       280       290     
pF1KB6 VPRPQALSGSSVVWELDDGLDEAFSRLAQSRTNPQVLDTGLTAQDMHYAQCLSPVDWDKP
                                                                   
CCDS58 FDMIPFSPISHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSK
        220       230       240       250       260       270      

>>CCDS2295.1 GULP1 gene_id:51454|Hs108|chr2               (304 aa)
 initn: 190 init1:  85 opt: 292  Z-score: 358.8  bits: 74.5 E(32554): 1.2e-13
Smith-Waterman score: 292; 25.6% identity (62.1% similar) in 211 aa overlap (29-234:7-215)

               10        20        30        40         50         
pF1KB6 MDALKSAGRALIRSPSLAKQSWGGGGRHRKLPENWTDTRETLLEGML-FSLKYLGMTLVE
                                   ::  ..:  : :.: . .. .. :.:: : ::
CCDS22                       MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVE
                                     10        20        30        

      60        70           80        90       100       110      
pF1KB6 QPKGEELSAAAIKRIVAT---AKASGKKLQKVTLKVSPRGIILTDNLTNQLIENVSIYRI
       :::: :.   :....  .    :. :.:. :: :..:  :. . .  :... .: ...::
CCDS22 QPKGTEVVRDAVRKLKFARHIKKSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRI
       40        50        60        70        80        90        

        120       130       140       150       160        170     
pF1KB6 SYCTADKMHDKVFAYIAQSQHNQSLECHAFLCTKRKMAQAVTLTVAQAFKVAF-EFWQVS
       :.:. ::   ..:..: .......  :..:   ..: :. .:::..::: .:. .: . .
CCDS22 SFCADDKTDKRIFTFICKDSESNKHLCYVF--DSEKCAEEITLTIGQAFDLAYRKFLESG
      100       110       120         130       140       150      

         180       190       200       210       220       230     
pF1KB6 KEEKEKRDKASQEGGDVLGARQDCTPSLKSLVATGNLLDLEETAKAPLSTVSANTTNMDE
        .. : : . .     .   . .     ...    : : . ...  : .... .. . : 
CCDS22 GKDVETRKQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDI
        160       170       180       190       200       210      

         240       250       260       270       280       290     
pF1KB6 VPRPQALSGSSVVWELDDGLDEAFSRLAQSRTNPQVLDTGLTAQDMHYAQCLSPVDWDKP
                                                                   
CCDS22 FDMIPFSPISHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSK
        220       230       240       250       260       270      




308 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:52:42 2016 done: Fri Nov  4 17:52:42 2016
 Total Scan time:  2.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]