Result of FASTA (omim) for
pF1KB6408
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6408, 335 aa
1>>>pF1KB6408 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9693+/-0.000354; mu= 18.2885+/- 0.022
mean_var=71.2460+/-14.649, 0's: 0 Z-trim(114.7): 118 B-trim: 421 in 1/54
Lambda= 0.151948
statistics sampled from 24616 (24743) to 24616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.29), width: 16
Scan time: 7.630
The best scores are: opt bits E(85289)
NP_003028 (OMIM: 603492) signaling lymphocytic act ( 335) 2209 493.3 3e-139
XP_016857619 (OMIM: 603492) PREDICTED: signaling l ( 338) 2038 455.8 5.9e-128
NP_001317683 (OMIM: 603492) signaling lymphocytic ( 357) 1759 394.7 1.6e-109
XP_005245513 (OMIM: 603492) PREDICTED: signaling l ( 305) 1556 350.1 3.5e-96
XP_011508207 (OMIM: 603492) PREDICTED: signaling l ( 196) 1298 293.4 2.7e-79
XP_016857620 (OMIM: 603492) PREDICTED: signaling l ( 218) 848 194.8 1.4e-49
XP_011507924 (OMIM: 180300,605554) PREDICTED: natu ( 329) 275 69.3 1.3e-11
NP_057466 (OMIM: 180300,605554) natural killer cel ( 365) 275 69.4 1.4e-11
XP_011507923 (OMIM: 180300,605554) PREDICTED: natu ( 334) 263 66.7 7.9e-11
NP_001160135 (OMIM: 180300,605554) natural killer ( 370) 263 66.7 8.6e-11
XP_016857335 (OMIM: 606620) PREDICTED: SLAM family ( 279) 239 61.4 2.7e-09
NP_064510 (OMIM: 606620) SLAM family member 8 isof ( 285) 239 61.4 2.7e-09
XP_016857334 (OMIM: 606620) PREDICTED: SLAM family ( 293) 237 61.0 3.7e-09
XP_011508080 (OMIM: 606620) PREDICTED: SLAM family ( 300) 237 61.0 3.8e-09
XP_016857333 (OMIM: 606620) PREDICTED: SLAM family ( 300) 237 61.0 3.8e-09
XP_011508079 (OMIM: 606620) PREDICTED: SLAM family ( 300) 237 61.0 3.8e-09
XP_005245402 (OMIM: 606620) PREDICTED: SLAM family ( 335) 237 61.0 4.1e-09
XP_011508078 (OMIM: 606620) PREDICTED: SLAM family ( 337) 237 61.0 4.2e-09
XP_011508077 (OMIM: 606620) PREDICTED: SLAM family ( 343) 237 61.0 4.2e-09
XP_016858245 (OMIM: 608589) PREDICTED: SLAM family ( 319) 220 57.3 5.3e-08
NP_254273 (OMIM: 608589) SLAM family member 9 isof ( 289) 219 57.0 5.7e-08
NP_001317670 (OMIM: 606620) SLAM family member 8 i ( 176) 206 54.0 2.8e-07
NP_003865 (OMIM: 604513) SLAM family member 5 isof ( 328) 208 54.6 3.3e-07
XP_011508081 (OMIM: 606620) PREDICTED: SLAM family ( 234) 204 53.6 4.7e-07
NP_001171808 (OMIM: 604513) SLAM family member 5 i ( 345) 204 53.8 6.4e-07
NP_443163 (OMIM: 606446) SLAM family member 6 isof ( 331) 202 53.3 8.4e-07
NP_001171643 (OMIM: 606446) SLAM family member 6 i ( 332) 202 53.3 8.4e-07
XP_016855704 (OMIM: 606446) PREDICTED: SLAM family ( 335) 202 53.3 8.4e-07
NP_001269521 (OMIM: 606625) SLAM family member 7 i ( 296) 200 52.9 1e-06
NP_001171810 (OMIM: 604513) SLAM family member 5 i ( 272) 199 52.6 1.1e-06
NP_067004 (OMIM: 606625) SLAM family member 7 isof ( 335) 200 52.9 1.1e-06
NP_001317671 (OMIM: 604513) SLAM family member 5 i ( 339) 199 52.7 1.3e-06
XP_011508130 (OMIM: 606625) PREDICTED: SLAM family ( 348) 199 52.7 1.4e-06
XP_011508131 (OMIM: 606625) PREDICTED: SLAM family ( 309) 194 51.6 2.7e-06
XP_011507862 (OMIM: 600684) PREDICTED: T-lymphocyt ( 598) 195 52.0 3.8e-06
XP_016856792 (OMIM: 600684) PREDICTED: T-lymphocyt ( 607) 195 52.0 3.8e-06
XP_011507858 (OMIM: 600684) PREDICTED: T-lymphocyt ( 612) 195 52.0 3.9e-06
XP_016856791 (OMIM: 600684) PREDICTED: T-lymphocyt ( 621) 195 52.0 3.9e-06
XP_011507854 (OMIM: 600684) PREDICTED: T-lymphocyt ( 679) 195 52.0 4.2e-06
XP_016856788 (OMIM: 600684) PREDICTED: T-lymphocyt ( 688) 195 52.1 4.2e-06
XP_016856787 (OMIM: 600684) PREDICTED: T-lymphocyt ( 697) 195 52.1 4.3e-06
XP_011507852 (OMIM: 600684) PREDICTED: T-lymphocyt ( 701) 195 52.1 4.3e-06
XP_011507851 (OMIM: 600684) PREDICTED: T-lymphocyt ( 702) 195 52.1 4.3e-06
XP_011507850 (OMIM: 600684) PREDICTED: T-lymphocyt ( 703) 195 52.1 4.3e-06
XP_016856786 (OMIM: 600684) PREDICTED: T-lymphocyt ( 711) 195 52.1 4.3e-06
NP_001248386 (OMIM: 600684) T-lymphocyte surface a ( 565) 189 50.7 9e-06
NP_001248385 (OMIM: 600684) T-lymphocyte surface a ( 641) 189 50.7 9.9e-06
NP_002339 (OMIM: 600684) T-lymphocyte surface anti ( 655) 189 50.7 1e-05
XP_016856790 (OMIM: 600684) PREDICTED: T-lymphocyt ( 664) 189 50.7 1e-05
XP_016856789 (OMIM: 600684) PREDICTED: T-lymphocyt ( 678) 189 50.7 1e-05
>>NP_003028 (OMIM: 603492) signaling lymphocytic activat (335 aa)
initn: 2209 init1: 2209 opt: 2209 Z-score: 2620.8 bits: 493.3 E(85289): 3e-139
Smith-Waterman score: 2209; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
250 260 270 280 290 300
310 320 330
pF1KB6 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::::::::::::::::::::::::::::::::::
NP_003 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
310 320 330
>>XP_016857619 (OMIM: 603492) PREDICTED: signaling lymph (338 aa)
initn: 2042 init1: 1747 opt: 2038 Z-score: 2418.2 bits: 455.8 E(85289): 5.9e-128
Smith-Waterman score: 2038; 93.0% identity (95.0% similar) in 341 aa overlap (1-335:1-338)
10 20 30 40 50 60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQK--PG----PLQKKL
:::::::::::::::::::::::. . :: . : .. .: :. :: ::::::
XP_016 YAGLLGGVIMILIMVVILQLRRRATLT---TTNQYWSQNVLTQDQERCPGCLPMPLQKKL
250 260 270 280 290
300 310 320 330
pF1KB6 DSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::::::::::::::::::::::::::::::::::::::::
XP_016 DSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
300 310 320 330
>>NP_001317683 (OMIM: 603492) signaling lymphocytic acti (357 aa)
initn: 1747 init1: 1747 opt: 1759 Z-score: 2087.3 bits: 394.7 E(85289): 1.6e-109
Smith-Waterman score: 1759; 91.6% identity (94.6% similar) in 297 aa overlap (1-293:1-294)
10 20 30 40 50 60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQK--PG--PLQKKLDS
:::::::::::::::::::::::. . :: . : .. .: :. :: :. :.
NP_001 YAGLLGGVIMILIMVVILQLRRRATLT---TTNQYWSQNVLTQDQERCPGCLPMVKRTIT
250 260 270 280 290
300 310 320 330
pF1KB6 FPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
NP_001 RQQWKKKALRSMPKSRNQVLFRRNLTPSQLRTLAPPYMLLPQSLSQSLSRKQIPSQSMLV
300 310 320 330 340 350
>>XP_005245513 (OMIM: 603492) PREDICTED: signaling lymph (305 aa)
initn: 2004 init1: 1556 opt: 1556 Z-score: 1847.7 bits: 350.1 E(85289): 3.5e-96
Smith-Waterman score: 1948; 91.0% identity (91.0% similar) in 335 aa overlap (1-335:1-305)
10 20 30 40 50 60
pF1KB6 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MDPKGLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HIVVTMAKSLENSVENKIVSLDPSEAGPPRYLGDRYKFYLENLTLGIRESRKEDEGWYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPWAV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPS-------
190 200 210 220 230
250 260 270 280 290 300
pF1KB6 YAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
:::::::::::::::::::::::::::::::::::::
XP_005 -----------------------GKTNHYQTTVEKKSLTIYAQVQKPGPLQKKLDSFPAQ
240 250 260 270
310 320 330
pF1KB6 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::::::::::::::::::::::::::::::::::
XP_005 DPCTTIYVAATEPVPESVQETNSITVYASVTLPES
280 290 300
>>XP_011508207 (OMIM: 603492) PREDICTED: signaling lymph (196 aa)
initn: 1298 init1: 1298 opt: 1298 Z-score: 1544.7 bits: 293.4 E(85289): 2.7e-79
Smith-Waterman score: 1298; 100.0% identity (100.0% similar) in 195 aa overlap (141-335:2-196)
120 130 140 150 160 170
pF1KB6 RKEDEGWYLMTLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGD
::::::::::::::::::::::::::::::
XP_011 MVSTPEIKVLNKTQENGTCTLILGCTVEKGD
10 20 30
180 190 200 210 220 230
pF1KB6 HVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRT
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB6 DPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQKPGPL
100 110 120 130 140 150
300 310 320 330
pF1KB6 QKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
160 170 180 190
>>XP_016857620 (OMIM: 603492) PREDICTED: signaling lymph (218 aa)
initn: 836 init1: 836 opt: 848 Z-score: 1010.9 bits: 194.8 E(85289): 1.4e-49
Smith-Waterman score: 848; 84.1% identity (89.8% similar) in 157 aa overlap (141-293:2-155)
120 130 140 150 160 170
pF1KB6 RKEDEGWYLMTLEKNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGD
::::::::::::::::::::::::::::::
XP_016 MVSTPEIKVLNKTQENGTCTLILGCTVEKGD
10 20 30
180 190 200 210 220 230
pF1KB6 HVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRT
40 50 60 70 80 90
240 250 260 270 280
pF1KB6 DPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYAQVQK--PG
:::::::::::::::::::::::::::::::::. . :: . : .. .: :. ::
XP_016 DPSETKPWAVYAGLLGGVIMILIMVVILQLRRRATLT---TTNQYWSQNVLTQDQERCPG
100 110 120 130 140
290 300 310 320 330
pF1KB6 --PLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:. :.
XP_016 CLPMVKRTITRQQWKKKALRSMPKSRNQVLFRRNLTPSQLRTLAPPYMLLPQSLSQSLSR
150 160 170 180 190 200
>>XP_011507924 (OMIM: 180300,605554) PREDICTED: natural (329 aa)
initn: 178 init1: 114 opt: 275 Z-score: 329.7 bits: 69.3 E(85289): 1.3e-11
Smith-Waterman score: 282; 24.1% identity (55.3% similar) in 320 aa overlap (35-330:1-315)
10 20 30 40 50 60
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
.: :. . .:: : .:. . : :.:
XP_011 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
10 20 30
70 80 90 100
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
. :. ::...:. : : ::. : : .::..: ..::
XP_011 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB6 TLGIRESRKEDEGWYLMTLEK-NVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLIL
.: :. ....: : : . . . . .:: .:. ....: :... .: . : : . :
XP_011 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVAL
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB6 GCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTF
.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.: .:.:.
XP_011 SCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSWESHTL
160 170 180 190 200
230 240 250 260 270 280
pF1KB6 SPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYA
. :.. .: . : . .. ..: .. . . :: . .. . : :. ::::
XP_011 NLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYE
210 220 230 240 250 260
290 300 310 320 330
pF1KB6 QVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
.:. : ... ..::. .. . .: : :: . :.:. .
XP_011 DVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRKGDRFY
270 280 290 300 310 320
XP_011 SFSG
>>NP_057466 (OMIM: 180300,605554) natural killer cell re (365 aa)
initn: 178 init1: 114 opt: 275 Z-score: 329.0 bits: 69.4 E(85289): 1.4e-11
Smith-Waterman score: 282; 24.1% identity (55.3% similar) in 320 aa overlap (35-330:1-315)
10 20 30 40 50 60
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
.: :. . .:: : .:. . : :.:
NP_057 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
10 20 30
70 80 90 100
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
. :. ::...:. : : ::. : : .::..: ..::
NP_057 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB6 TLGIRESRKEDEGWYLMTLEK-NVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGTCTLIL
.: :. ....: : : . . . . .:: .:. ....: :... .: . : : . :
NP_057 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFDKVEKPRLQGQGKILDRGRCQVAL
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB6 GCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISNNSQTF
.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.: .:.:.
NP_057 SCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSWESHTL
160 170 180 190 200
230 240 250 260 270 280
pF1KB6 SPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKSLTIYA
. :.. .: . : . .. ..: .. . . :: . .. . : :. ::::
NP_057 NLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEFLTIYE
210 220 230 240 250 260
290 300 310 320 330
pF1KB6 QVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
.:. : ... ..::. .. . .: : :: . :.:. .
NP_057 DVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRKSGSRK
270 280 290 300 310 320
NP_057 RNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
330 340 350 360
>>XP_011507923 (OMIM: 180300,605554) PREDICTED: natural (334 aa)
initn: 178 init1: 114 opt: 263 Z-score: 315.4 bits: 66.7 E(85289): 7.9e-11
Smith-Waterman score: 270; 23.7% identity (54.2% similar) in 325 aa overlap (35-330:1-320)
10 20 30 40 50 60
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
.: :. . .:: : .:. . : :.:
XP_011 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
10 20 30
70 80 90 100
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
. :. ::...:. : : ::. : : .::..: ..::
XP_011 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
40 50 60 70 80 90
110 120 130 140 150
pF1KB6 TLGIRESRKEDEGWYLMTLE------KNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGT
.: :. ....: : : . . .... : : .. : ..: :... .: . :
XP_011 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFESLLPDKVEKPRLQGQGKILDRGR
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB6 CTLILGCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISN
: . :.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.:
XP_011 CQVALSCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSW
160 170 180 190 200
220 230 240 250 260 270
pF1KB6 NSQTFSPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKS
.:.:.. :.. .: . : . .. ..: .. . . :: . .. . : :.
XP_011 ESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEF
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB6 LTIYAQVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::: .:. : ... ..::. .. . .: : :: . :.:. .
XP_011 LTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRK
270 280 290 300 310 320
XP_011 GDRFYSFSG
330
>>NP_001160135 (OMIM: 180300,605554) natural killer cell (370 aa)
initn: 178 init1: 114 opt: 263 Z-score: 314.8 bits: 66.7 E(85289): 8.6e-11
Smith-Waterman score: 270; 23.7% identity (54.2% similar) in 325 aa overlap (35-330:1-320)
10 20 30 40 50 60
pF1KB6 GLLSLTFVLFLSLAFGASYGTGGRMMNCPKILRQLGSKVLLPLTYERINKSMNKSI-HIV
.: :. . .:: : .:. . : :.:
NP_001 MLGQVVTLILLLLLKVYQGKGCQGSADHVV
10 20 30
70 80 90 100
pF1KB6 VTMAKSLE---NSVENKIVS-----LDPSEAG------------PPRYLGDRYKFYLENL
. :. ::...:. : : ::. : : .::..: ..::
NP_001 SISGVPLQLQPNSIQTKVDSIAWKKLLPSQNGFHHILKWENGSLPSNTSNDRFSFIVKNL
40 50 60 70 80 90
110 120 130 140 150
pF1KB6 TLGIRESRKEDEGWYLMTLE------KNVSVQRFCLQLRLYEQVSTPEIKVLNKTQENGT
.: :. ....: : : . . .... : : .. : ..: :... .: . :
NP_001 SLLIKAAQQQDSGLYCLEVTSISGKVQTATFQVFVFESLLPDKVEKPRLQGQGKILDRGR
100 110 120 130 140 150
160 170 180 190 200 210
pF1KB6 CTLILGCTVEKGDHVAYSWSEKAGTHPLNPANSSHLLSLTLGPQHADNIYICTVSNPISN
: . :.: : . .:.:.: . :.. .. :.. :. . .. . : :.::::.:
NP_001 CQVALSCLVSRDGNVSYAWYR--GSKLIQTAGNLTYLDEEVDI-NGTHTYTCNVSNPVSW
160 170 180 190 200
220 230 240 250 260 270
pF1KB6 NSQTFSPWPGCRTDPSETKPWAVYAGLLGGVIMILIMVVILQLRRRGKTNHYQTTVEKKS
.:.:.. :.. .: . : . .. ..: .. . . :: . .. . : :.
NP_001 ESHTLNLTQDCQNAHQEFRFWPFLVIIVILSALFLGTLACFCVWRRKRKEKQSETSPKEF
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB6 LTIYAQVQ--KPGPLQKKLDSFPAQDPCTTIYVAATEPVPESVQETNSITVYASVTLPES
:::: .:. : ... ..::. .. . .: : :: . :.:. .
NP_001 LTIYEDVKDLKTRRNHEQEQTFPGGGSTIYSMIQSQSSAPTS-QEP-AYTLYSLIQPSRK
270 280 290 300 310 320
NP_001 SGSRKRNHSPSFNSTIYEVIGKSQPKAQNPARLSRKELENFDVYS
330 340 350 360 370
335 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:51:06 2016 done: Fri Nov 4 20:51:07 2016
Total Scan time: 7.630 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]