Result of FASTA (omim) for
pF1KB6404
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6404, 334 aa
1>>>pF1KB6404 334 - 334 aa - 334 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0647+/-0.000425; mu= 13.1878+/- 0.026
mean_var=166.9052+/-34.273, 0's: 0 Z-trim(114.5): 572 B-trim: 66 in 2/50
Lambda= 0.099275
statistics sampled from 23682 (24434) to 23682 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.286), width: 16
Scan time: 7.980
The best scores are: opt bits E(85289)
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 2251 334.9 1.5e-91
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 2251 334.9 1.5e-91
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 2251 334.9 1.5e-91
NP_115708 (OMIM: 616850) WD repeat domain-containi ( 315) 544 90.3 5.7e-18
NP_001093207 (OMIM: 616850) WD repeat domain-conta ( 315) 544 90.3 5.7e-18
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 537 89.4 1.2e-17
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 537 89.4 1.2e-17
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 537 89.4 1.3e-17
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 537 89.5 1.3e-17
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 522 87.2 5.2e-17
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 519 86.7 6.6e-17
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 515 86.3 1.1e-16
NP_001188493 (OMIM: 605961) pleiotropic regulator ( 505) 501 84.5 5.4e-16
NP_002660 (OMIM: 605961) pleiotropic regulator 1 i ( 514) 501 84.5 5.5e-16
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 498 83.8 5.6e-16
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 498 83.8 5.6e-16
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 498 83.8 5.6e-16
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 498 83.8 5.6e-16
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 498 83.9 6.2e-16
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 498 84.0 7.3e-16
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 498 84.0 7.3e-16
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 498 84.1 7.5e-16
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 498 84.1 7.5e-16
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537) 498 84.1 7.6e-16
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 498 84.1 7.9e-16
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600) 498 84.1 8.1e-16
NP_078808 (OMIM: 612173) sperm-associated antigen ( 631) 498 84.2 8.3e-16
XP_016880191 (OMIM: 601545,607432) PREDICTED: plat ( 345) 475 80.5 5.7e-15
NP_000421 (OMIM: 601545,607432) platelet-activatin ( 410) 475 80.6 6.3e-15
XP_016880190 (OMIM: 601545,607432) PREDICTED: plat ( 410) 475 80.6 6.3e-15
XP_016880189 (OMIM: 601545,607432) PREDICTED: plat ( 410) 475 80.6 6.3e-15
XP_016880188 (OMIM: 601545,607432) PREDICTED: plat ( 410) 475 80.6 6.3e-15
XP_011522203 (OMIM: 601545,607432) PREDICTED: plat ( 428) 475 80.6 6.5e-15
XP_011522205 (OMIM: 601545,607432) PREDICTED: plat ( 428) 475 80.6 6.5e-15
XP_011522204 (OMIM: 601545,607432) PREDICTED: plat ( 428) 475 80.6 6.5e-15
NP_056975 (OMIM: 605585) pre-mRNA-processing facto ( 579) 463 79.1 2.6e-14
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 452 77.4 6.4e-14
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 452 77.4 6.8e-14
XP_011510120 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 452 77.5 7.6e-14
XP_011510119 (OMIM: 612173) PREDICTED: sperm-assoc ( 582) 452 77.5 7.6e-14
XP_011510118 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 452 77.5 7.7e-14
XP_011510117 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 452 77.5 7.7e-14
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 441 75.5 1.5e-13
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 441 75.5 1.5e-13
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 441 75.9 2.1e-13
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 441 75.9 2.1e-13
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 432 74.6 5.3e-13
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 432 74.7 5.6e-13
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 432 74.7 5.8e-13
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 432 74.7 6.1e-13
>>XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-conta (334 aa)
initn: 2251 init1: 2251 opt: 2251 Z-score: 1764.6 bits: 334.9 E(85289): 1.5e-91
Smith-Waterman score: 2251; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH
250 260 270 280 290 300
310 320 330
pF1KB6 TDVVISTACHPTENIIASAALENDKTIKLWKSDC
::::::::::::::::::::::::::::::::::
XP_005 TDVVISTACHPTENIIASAALENDKTIKLWKSDC
310 320 330
>>NP_438172 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 2251 init1: 2251 opt: 2251 Z-score: 1764.6 bits: 334.9 E(85289): 1.5e-91
Smith-Waterman score: 2251; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_438 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_438 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_438 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_438 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_438 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH
250 260 270 280 290 300
310 320 330
pF1KB6 TDVVISTACHPTENIIASAALENDKTIKLWKSDC
::::::::::::::::::::::::::::::::::
NP_438 TDVVISTACHPTENIIASAALENDKTIKLWKSDC
310 320 330
>>NP_060058 (OMIM: 609012) WD repeat-containing protein (334 aa)
initn: 2251 init1: 2251 opt: 2251 Z-score: 1764.6 bits: 334.9 E(85289): 1.5e-91
Smith-Waterman score: 2251; 100.0% identity (100.0% similar) in 334 aa overlap (1-334:1-334)
10 20 30 40 50 60
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH
250 260 270 280 290 300
310 320 330
pF1KB6 TDVVISTACHPTENIIASAALENDKTIKLWKSDC
::::::::::::::::::::::::::::::::::
NP_060 TDVVISTACHPTENIIASAALENDKTIKLWKSDC
310 320 330
>>NP_115708 (OMIM: 616850) WD repeat domain-containing p (315 aa)
initn: 746 init1: 311 opt: 544 Z-score: 443.6 bits: 90.3 E(85289): 5.7e-18
Smith-Waterman score: 544; 32.7% identity (61.5% similar) in 312 aa overlap (25-333:5-306)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPNGEW
. :: : . :. :: :: :: .:.:. .:..
NP_115 MAFPEPKPRPPELPQKRLK-TLDCGQGAVRAVRFNVDGNY
10 20 30
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG
. ..:: .:.:. : . .: ::: . :.: : :.. : :.. ::.. .:::.::
NP_115 CLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASG
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAV
. .. ..::.. : .:: ....:.:::.: :.: :: .. . ..:: : ::.:
NP_115 QVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSV
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT
. . :...: :: : .: :: .. . . :.. . :: .:. :...::.:
NP_115 KVS--DHEILAGSVDGRVRRYDLRMGQLFSDYVGS---PITCTCFSRDGQCTLVSSLDST
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL
:.: : . :. : : ::::..: . .: . .:: :::. :..:.: .. :
NP_115 LRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTH-VVSCSEDGKVFFWDLVEGALALAL
220 230 240 250 260 270
300 310 320 330
pF1KB6 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
. :: : : :::: . .: ... :. .
NP_115 PVGSGVVQSLAYHPTEPCLLTAM---GGSVQCWREEAYEAEDGAG
280 290 300 310
>>NP_001093207 (OMIM: 616850) WD repeat domain-containin (315 aa)
initn: 746 init1: 311 opt: 544 Z-score: 443.6 bits: 90.3 E(85289): 5.7e-18
Smith-Waterman score: 544; 32.7% identity (61.5% similar) in 312 aa overlap (25-333:5-306)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPNGEW
. :: : . :. :: :: :: .:.:. .:..
NP_001 MAFPEPKPRPPELPQKRLK-TLDCGQGAVRAVRFNVDGNY
10 20 30
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG
. ..:: .:.:. : . .: ::: . :.: : :.. : :.. ::.. .:::.::
NP_001 CLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASG
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--LKTLPAHSDPVSAV
. .. ..::.. : .:: ....:.:::.: :.: :: .. . ..:: : ::.:
NP_001 QVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSV
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT
. . :...: :: : .: :: .. . . :.. . :: .:. :...::.:
NP_001 KVS--DHEILAGSVDGRVRRYDLRMGQLFSDYVGS---PITCTCFSRDGQCTLVSSLDST
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL
:.: : . :. : : ::::..: . .: . .:: :::. :..:.: .. :
NP_001 LRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTH-VVSCSEDGKVFFWDLVEGALALAL
220 230 240 250 260 270
300 310 320 330
pF1KB6 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
. :: : : :::: . .: ... :. .
NP_001 PVGSGVVQSLAYHPTEPCLLTAM---GGSVQCWREEAYEAEDGAG
280 290 300 310
>>XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 cen (321 aa)
initn: 389 init1: 389 opt: 537 Z-score: 438.1 bits: 89.4 E(85289): 1.2e-17
Smith-Waterman score: 537; 35.7% identity (69.0% similar) in 258 aa overlap (31-286:10-260)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKP-NYALKFTLAGHTKAVSSVKFSPNGEW
.:: . : .:: :: ::. :.:::.:.
XP_016 MDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNFSPSGHL
10 20 30
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS
:::.: :: ..:: . . : :.:. .: . .: . ::.. .:.::::::.:.: .
XP_016 LASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH
: : .:. : :.: : .:.:.. ::::.: :..:..:: .. .:... :. :. :
XP_016 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL
:. .:. :.....:. ..::. . . :. . . :. ..: :.:.:...:. :.::
XP_016 FHPSGTCIAAAGMDNTVKVWDVRTHRLLQHY-QLHSAAVNGLSFHPSGNYLITASSDSTL
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ
:. : .:. : : ::.. . :: :: ....::. :. :..:
XP_016 KILDLMEGRLLYTLHGHQGPATTV--AFSRTG-EYFASGGSDEQVMVWKSNFDIVDHGEV
220 230 240 250 260 270
300 310 320 330
pF1KB6 GHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
XP_016 TKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCLENQQLIMQRATP
280 290 300 310 320
>>NP_001155052 (OMIM: 614783,614813) POC1 centriolar pro (359 aa)
initn: 389 init1: 389 opt: 537 Z-score: 437.6 bits: 89.4 E(85289): 1.2e-17
Smith-Waterman score: 537; 35.7% identity (69.0% similar) in 258 aa overlap (31-286:48-298)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKP-NYALKFTLAGHTKAVSSVKFSPNGEW
.:: . : .:: :: ::. :.:::.:.
NP_001 HRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNFSPSGHL
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS
:::.: :: ..:: . . : :.:. .: . .: . ::.. .:.::::::.:.: .
NP_001 LASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH
: : .:. : :.: : .:.:.. ::::.: :..:..:: .. .:... :. :. :
NP_001 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL
:. .:. :.....:. ..::. . . :. . . :. ..: :.:.:...:. :.::
NP_001 FHPSGTCIAAAGMDNTVKVWDVRTHRLLQHY-QLHSAAVNGLSFHPSGNYLITASSDSTL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB6 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ
:. : .:. : : ::.. . :: :: ....::. :. :..:
NP_001 KILDLMEGRLLYTLHGHQGPATTV--AFSRTG-EYFASGGSDEQVMVWKSNFDIVDHGEV
260 270 280 290 300 310
300 310 320 330
pF1KB6 GHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
NP_001 TKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCLENQQLIMQRATP
320 330 340 350
>>NP_001155053 (OMIM: 614783,614813) POC1 centriolar pro (369 aa)
initn: 389 init1: 389 opt: 537 Z-score: 437.5 bits: 89.4 E(85289): 1.3e-17
Smith-Waterman score: 537; 35.7% identity (69.0% similar) in 258 aa overlap (31-286:10-260)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKP-NYALKFTLAGHTKAVSSVKFSPNGEW
.:: . : .:: :: ::. :.:::.:.
NP_001 MDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNFSPSGHL
10 20 30
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS
:::.: :: ..:: . . : :.:. .: . .: . ::.. .:.::::::.:.: .
NP_001 LASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH
: : .:. : :.: : .:.:.. ::::.: :..:..:: .. .:... :. :. :
NP_001 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL
:. .:. :.....:. ..::. . . :. . . :. ..: :.:.:...:. :.::
NP_001 FHPSGTCIAAAGMDNTVKVWDVRTHRLLQHY-QLHSAAVNGLSFHPSGNYLITASSDSTL
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ
:. : .:. : : ::.. . :: :: ....::. :. :..:
NP_001 KILDLMEGRLLYTLHGHQGPATTV--AFSRTG-EYFASGGSDEQVMVWKSNFDIVDHGEV
220 230 240 250 260 270
300 310 320 330
pF1KB6 GHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
NP_001 TKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQL
280 290 300 310 320 330
>>NP_056241 (OMIM: 614783,614813) POC1 centriolar protei (407 aa)
initn: 389 init1: 389 opt: 537 Z-score: 437.0 bits: 89.5 E(85289): 1.3e-17
Smith-Waterman score: 537; 35.7% identity (69.0% similar) in 258 aa overlap (31-286:48-298)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKP-NYALKFTLAGHTKAVSSVKFSPNGEW
.:: . : .:: :: ::. :.:::.:.
NP_056 HRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNFSPSGHL
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS
:::.: :: ..:: . . : :.:. .: . .: . ::.. .:.::::::.:.: .
NP_056 LASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH
: : .:. : :.: : .:.:.. ::::.: :..:..:: .. .:... :. :. :
NP_056 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL
:. .:. :.....:. ..::. . . :. . . :. ..: :.:.:...:. :.::
NP_056 FHPSGTCIAAAGMDNTVKVWDVRTHRLLQHY-QLHSAAVNGLSFHPSGNYLITASSDSTL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB6 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ
:. : .:. : : ::.. . :: :: ....::. :. :..:
NP_056 KILDLMEGRLLYTLHGHQGPATTV--AFSRTG-EYFASGGSDEQVMVWKSNFDIVDHGEV
260 270 280 290 300 310
300 310 320 330
pF1KB6 GHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
NP_056 TKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQL
320 330 340 350 360 370
>>XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 cen (326 aa)
initn: 389 init1: 389 opt: 522 Z-score: 426.4 bits: 87.2 E(85289): 5.2e-17
Smith-Waterman score: 522; 34.4% identity (66.7% similar) in 270 aa overlap (31-298:48-311)
10 20 30 40 50
pF1KB6 MATEEKKPETEAARAQPTPSSSATQSKPTPVKP-NYALKFTLAGHTKAVSSVKFSPNGEW
.:: . : .:: :: ::. :.:::.:.
XP_011 HRDAVTCVDFSINTKQLASGSMDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNFSPSGHL
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS
:::.: :: ..:: . . : :.:. .: . .: . ::.. .:.::::::.:.: .
XP_011 LASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHR
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH
: : .:. : :.: : .:.:.. ::::.: :..:..:: .. .:... :. :. :
XP_011 QKFLFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVD
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL
:. .:. :.....:. ..::. . . :. . . :. ..: :.:.:...:. :.::
XP_011 FHPSGTCIAAAGMDNTVKVWDVRTHRLLQHY-QLHSAAVNGLSFHPSGNYLITASSDSTL
200 210 220 230 240 250
240 250 260 270 280 290
pF1KB6 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ
:. : .:. : : ::.. . :: :: . .::... : : . . .::.
XP_011 KILDLMEGRLLYTLHGHQGPATTV--AFSRTGEYFASGGSDEQTVSILEQRLTLTEDKLK
260 270 280 290 300 310
300 310 320 330
pF1KB6 GHTDVVISTACHPTENIIASAALENDKTIKLWKSDC
XP_011 QCLENQQLIMQRATP
320
334 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:52:46 2016 done: Fri Nov 4 22:52:47 2016
Total Scan time: 7.980 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]