FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6401, 304 aa
  1>>>pF1KB6401 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5141+/-0.000833; mu= 6.7041+/- 0.051
 mean_var=131.0280+/-27.038, 0's: 0 Z-trim(112.3): 46  B-trim: 397 in 1/50
 Lambda= 0.112045
 statistics sampled from 13071 (13116) to 13071 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.403), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS2295.1 GULP1 gene_id:51454|Hs108|chr2          ( 304) 2054 342.6 2.2e-94
CCDS58742.1 GULP1 gene_id:51454|Hs108|chr2         ( 291) 1890 316.1   2e-86
CCDS58743.1 GULP1 gene_id:51454|Hs108|chr2         ( 201) 1152 196.7 1.2e-50


>>CCDS2295.1 GULP1 gene_id:51454|Hs108|chr2               (304 aa)
 initn: 2054 init1: 2054 opt: 2054  Z-score: 1808.1  bits: 342.6 E(32554): 2.2e-94
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
              250       260       270       280       290       300

           
pF1KB6 DSRC
       ::::
CCDS22 DSRC
           

>>CCDS58742.1 GULP1 gene_id:51454|Hs108|chr2              (291 aa)
 initn: 1890 init1: 1890 opt: 1890  Z-score: 1665.1  bits: 316.1 E(32554): 2e-86
Smith-Waterman score: 1890; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KSEGQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDPL
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS58 PVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQRQRWRGSKWD         
              250       260       270       280       290          

           
pF1KB6 DSRC

>>CCDS58743.1 GULP1 gene_id:51454|Hs108|chr2              (201 aa)
 initn: 1348 init1: 1152 opt: 1152  Z-score: 1022.8  bits: 196.7 E(32554): 1.2e-50
Smith-Waterman score: 1152; 100.0% identity (100.0% similar) in 171 aa overlap (134-304:31-201)

           110       120       130       140       150       160   
pF1KB6 DKTDKRIFTFICKDSESNKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETR
                                     ::::::::::::::::::::::::::::::
CCDS58 MNRAFSRKKDKTWMHTPEALSKHFIPYNAKAEEITLTIGQAFDLAYRKFLESGGKDVETR
               10        20        30        40        50        60

           170       180       190       200       210       220   
pF1KB6 KQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KQIAGLQKRIQDLETENMELKNKVQDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFS
               70        80        90       100       110       120

           230       240       250       260       270       280   
pF1KB6 PISHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PISHQSSMPTRNGTQPPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEG
              130       140       150       160       170       180

           290       300    
pF1KB6 FKMGLTLEGTVFCLDPLDSRC
       :::::::::::::::::::::
CCDS58 FKMGLTLEGTVFCLDPLDSRC
              190       200 




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:48:41 2016 done: Fri Nov  4 20:48:42 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]