FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6392, 303 aa
  1>>>pF1KB6392 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5273+/-0.000904; mu= 16.5958+/- 0.055
 mean_var=121.5543+/-24.249, 0's: 0 Z-trim(110.9): 40  B-trim: 46 in 1/50
 Lambda= 0.116329
 statistics sampled from 11898 (11932) to 11898 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS34345.1 RNF144B gene_id:255488|Hs108|chr6      ( 303) 2225 384.1 7.1e-107
CCDS1657.1 RNF144A gene_id:9781|Hs108|chr2         ( 292) 1227 216.6 1.8e-56
CCDS10244.1 ARIH1 gene_id:25820|Hs108|chr15        ( 557)  388 76.1 6.7e-14
CCDS2780.1 ARIH2 gene_id:10425|Hs108|chr3          ( 493)  379 74.5 1.8e-13


>>CCDS34345.1 RNF144B gene_id:255488|Hs108|chr6           (303 aa)
 initn: 2225 init1: 2225 opt: 2225  Z-score: 2032.2  bits: 384.1 E(32554): 7.1e-107
Smith-Waterman score: 2225; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KB6 MGSAGRLHYLAMTAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGSAGRLHYLAMTAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHRA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCIICCVCKSCRGKKKKHDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCIICCVCKSCRGKKKKHDP
              250       260       270       280       290       300

          
pF1KB6 STT
       :::
CCDS34 STT
          

>>CCDS1657.1 RNF144A gene_id:9781|Hs108|chr2              (292 aa)
 initn: 1232 init1: 620 opt: 1227  Z-score: 1127.2  bits: 216.6 E(32554): 1.8e-56
Smith-Waterman score: 1227; 55.6% identity (77.3% similar) in 295 aa overlap (12-303:1-292)

               10        20         30        40        50         
pF1KB6 MGSAGRLHYLAMTAENPTPG-DLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQ
                  ::.    :  :::  ::..::::: :  ...:::. .::::::: ::::
CCDS16            MTTTRYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
                          10        20        30        40         

      60        70        80        90       100       110         
pF1KB6 YMQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRT
       :..: :.::  . :.::: .: ..: ::: :: :.: .. .: :..:.::::: .:: ::
CCDS16 YVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRT
      50        60        70        80        90       100         

     120       130       140       150       160       170         
pF1KB6 WCPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIV-LPTEH
       :::.. ::.:: . .     :  :.: .:...::: :: .::   .: ...::. :: : 
CCDS16 WCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGET
     110       120       130       140       150       160         

      180        190       200       210       220       230       
pF1KB6 RALFGTDAE-APIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDK
        : :  . . ::::.:: :.:::::.:::::::::::::.::::::..::.:..: ::::
CCDS16 SAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDK
     170       180       190       200       210       220         

       240       250       260       270       280       290       
pF1KB6 GPCRNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCIICCVCKSCRGKKKK
       ::::::::::::::.:.:::::::..:.:.. ::.::.::::.: ..:: ::  .:    
CCDS16 GPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCSKGDD--
     230       240       250       260       270       280         

       300   
pF1KB6 HDPSTT
        ::  :
CCDS16 -DPLPT
        290  

>>CCDS10244.1 ARIH1 gene_id:25820|Hs108|chr15             (557 aa)
 initn: 328 init1: 159 opt: 388  Z-score: 363.0  bits: 76.1 E(32554): 6.7e-14
Smith-Waterman score: 388; 31.5% identity (55.0% similar) in 200 aa overlap (28-223:184-376)

                  10        20        30        40        50       
pF1KB6    MGSAGRLHYLAMTAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACL
                                     . :..:  .   . .: : ::   ::  : 
CCDS10 LEKLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGL-ECGHKFCMQCW
           160       170       180       190       200        210  

        60         70        80        90       100        110     
pF1KB6 KQYMQLAI-REGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQL-YQRLKFEREVHLD
       ..:.   : .:: :. :.::   :     ...  .  :.  .. .: ::.:  .  :. .
CCDS10 SEYLTTKIMEEGMGQTISCPAHGC--DILVDDNTVMRLITDSKVKLKYQHLITNSFVECN
            220       230         240       250       260       270

         120       130       140       150       160       170     
pF1KB6 PYRTWCPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIVLP
           :::. ::. :  :   : ..::  .: .:  .::  : . ::  :.:.  .  .  
CCDS10 RLLKWCPAPDCHHVVKVQYPD-AKPV--RC-KCGRQFCFNCGENWHDPVKCKWLKKWIKK
              280       290           300       310       320      

         180       190       200       210         220       230   
pF1KB6 TEHRALFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKN--CKHTFCWYCLQNLDNDIFLR
        .  .  ..   :  :.:: :.: ::.. :: .:.:.:  ::  ::: ::          
CCDS10 CDDDSETSNWIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAW
        330       340       350       360       370       380      

           240       250       260       270       280       290   
pF1KB6 HYDKGPCRNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCIICCVCKSCRG
                                                                   
CCDS10 YNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKMEEMQ
        390       400       410       420       430       440      

>>CCDS2780.1 ARIH2 gene_id:10425|Hs108|chr3               (493 aa)
 initn: 329 init1: 217 opt: 379  Z-score: 355.4  bits: 74.5 E(32554): 1.8e-13
Smith-Waterman score: 379; 29.0% identity (54.3% similar) in 210 aa overlap (17-223:124-327)

                             10        20          30        40    
pF1KB6               MGSAGRLHYLAMTAENPTPGDLAPA--PLITCKLCLCEQSLDKMTT
                                     :.:.  .:.  :   : .:.     ... .
CCDS27 ILVNFHWQVSEILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLS
           100       110       120       130       140       150   

           50        60        70        80        90       100    
pF1KB6 LQECQCIFCTACLKQYMQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQF-QLY
       :  ::  :: .: .:. .. ...: :  ..:  . :       :  .  :.: ... . :
CCDS27 LA-CQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDC--PLRTPEDFVFPLLPNEELREKY
            160       170       180         190       200       210

           110       120       130       140       150       160   
pF1KB6 QRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAE
       .:  :.  :.       :: :::  :  :  ..: .   :.:  :.  ::  :.. .:: 
CCDS27 RRYLFRDYVESHYQLQLCPGADCPMVIRV--QEP-RARRVQCNRCNEVFCFKCRQMYHAP
              220       230         240        250       260       

           170       180       190       200       210       220   
pF1KB6 VSCRDSQPIVLPTEHRALFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCL
       ..:   .  .      .  ..   :  :.:: : . ::.: :: .:.:..::: :::.::
CCDS27 TDCATIRKWLTKCADDSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCL
       270       280       290       300       310       320       

           230       240       250       260       270       280   
pF1KB6 QNLDNDIFLRHYDKGPCRNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCI
                                                                   
CCDS27 GDWKTHGSEYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQ
       330       340       350       360       370       380       




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:50:52 2016 done: Fri Nov  4 22:50:53 2016
 Total Scan time:  2.490 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]