Result of FASTA (ccds) for
pF1KB6389
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6389, 275 aa
1>>>pF1KB6389 275 - 275 aa - 275 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1399+/-0.000827; mu= 15.9888+/- 0.050
mean_var=67.3985+/-13.390, 0's: 0 Z-trim(107.0): 22 B-trim: 7 in 1/51
Lambda= 0.156224
statistics sampled from 9273 (9290) to 9273 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.285), width: 16
Scan time: 2.310
The best scores are: opt bits E(32554)
CCDS11657.1 ICAM2 gene_id:3384|Hs108|chr17 ( 275) 1835 422.3 1.8e-118
CCDS12235.1 ICAM3 gene_id:3385|Hs108|chr19 ( 547) 419 103.4 3.7e-22
CCDS12233.1 ICAM5 gene_id:7087|Hs108|chr19 ( 924) 388 96.5 7.2e-20
CCDS12231.1 ICAM1 gene_id:3383|Hs108|chr19 ( 532) 366 91.4 1.4e-18
CCDS12232.1 ICAM4 gene_id:3386|Hs108|chr19 ( 271) 289 73.9 1.4e-13
CCDS82290.1 ICAM3 gene_id:3385|Hs108|chr19 ( 470) 288 73.8 2.6e-13
CCDS42500.1 ICAM4 gene_id:3386|Hs108|chr19 ( 237) 280 71.8 5.1e-13
>>CCDS11657.1 ICAM2 gene_id:3384|Hs108|chr17 (275 aa)
initn: 1835 init1: 1835 opt: 1835 Z-score: 2240.3 bits: 422.3 E(32554): 1.8e-118
Smith-Waterman score: 1835; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)
10 20 30 40 50 60
pF1KB6 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT
190 200 210 220 230 240
250 260 270
pF1KB6 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
:::::::::::::::::::::::::::::::::::
CCDS11 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
250 260 270
>>CCDS12235.1 ICAM3 gene_id:3385|Hs108|chr19 (547 aa)
initn: 449 init1: 302 opt: 419 Z-score: 511.2 bits: 103.4 E(32554): 3.7e-22
Smith-Waterman score: 419; 36.0% identity (63.1% similar) in 214 aa overlap (16-225:18-226)
10 20 30 40 50
pF1KB6 MSSFGYRTLTVALFTLICC---PGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQP
:.:: :: . . : ..:.:.. .. ::: ::::: : .
CCDS12 MATMVPSVLWPRACWTLLVCCLLTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCPSS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 EVGGLETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQV
: .:::::.: :. : . .::.. .. . : :.:.: . .::..::. :..:
CCDS12 EKIALETSLSKELVASGMGWAAFNLSNVTGNSRILCSVYCNGSQITGSSNITVYRLPERV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF
:. : ::..::..:.: : :::. :.: .: : . :. : :.:::
CCDS12 ELAPLPPWQPVGQNFTLRCQVEDGSPRTSLTVVLLRWEEELSRQ---PAVEEPAEVTATV
130 140 150 160 170
180 190 200 210 220 230
pF1KB6 NSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQMVIIVTVVSVL
:.:.: ::: . ::.. .: ..: . :::..:. . ::. ..:
CCDS12 --LASRDDHGAPFSCRTELDMQPQGLGLFVNTSAPRQLRTFVLPVTPPRLVAPRFLEVET
180 190 200 210 220 230
240 250 260 270
pF1KB6 LSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
CCDS12 SWPVDCTLDGLFPASEAQVYLALGDQMLNATVMNHGDTLTATATATARADQEGAREIVCN
240 250 260 270 280 290
>>CCDS12233.1 ICAM5 gene_id:7087|Hs108|chr19 (924 aa)
initn: 355 init1: 223 opt: 388 Z-score: 470.2 bits: 96.5 E(32554): 7.2e-20
Smith-Waterman score: 388; 35.8% identity (58.6% similar) in 215 aa overlap (9-222:19-230)
10 20 30 40 50
pF1KB6 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCST
: ..:: : . ... : . ..:. :: ::: .::::
CCDS12 MPGPSPGLRRALLGLWAALGLGLFGL---SAVSQEPFWADLQPRVAFVERGGSLWLNCST
10 20 30 40 50
60 70 80 90 100
pF1KB6 TCNQPEVGGLETSLDKILLDEQAQW-KHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVY
.: .:: ::::::: . .. .: . ::. .: : : :. . . . . ..
CCDS12 NCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 QPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQ
: : .: : : ::..::. :::: . : :::: :.:: . : ..:. : .
CCDS12 QRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRAR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 EATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVT
:. : . : ::: :::: : ::: .: ..:.. :::. :. . :.
CCDS12 GAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDAPRLAAPR
180 190 200 210 220 230
230 240 250 260 270
pF1KB6 VVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
CCDS12 LLEVGSERPVSCTLDGLFPASEARVYLALGDQNLSPDVTLEGDAFVATATATASAEQEGA
240 250 260 270 280 290
>>CCDS12231.1 ICAM1 gene_id:3383|Hs108|chr19 (532 aa)
initn: 326 init1: 170 opt: 366 Z-score: 446.8 bits: 91.4 E(32554): 1.4e-18
Smith-Waterman score: 366; 35.0% identity (62.7% similar) in 220 aa overlap (9-225:13-222)
10 20 30 40 50
pF1KB6 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPE
: : : .:. ::. . . : :.:. . ::. :.:::.:.::.
CCDS12 MAPSSPRPALPALLVLLGALFPGPGNAQ----TSVSPSKVILPRGGSVLVTCSTSCDQPK
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VGGLETSLDKI-LLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQV
. :.:: : : :: . : : .::...:. .:. .: : . .. ..:: :..:
CCDS12 LLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF
:. :. :::..:..:.: : .::. :.::.. :. : :. : :.:.:
CCDS12 ELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVGEPAEVTTT-
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 NSTADREDGH-RNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQMVIIVTVVSV
. :.: : :::: . ::: .: ..:.. ::: .:. . :.. :.:
CCDS12 --VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD
180 190 200 210 220 230
240 250 260 270
pF1KB6 LLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
CCDS12 TQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTC
240 250 260 270 280 290
>>CCDS12232.1 ICAM4 gene_id:3386|Hs108|chr19 (271 aa)
initn: 196 init1: 95 opt: 289 Z-score: 357.3 bits: 73.9 E(32554): 1.4e-13
Smith-Waterman score: 289; 27.0% identity (62.2% similar) in 230 aa overlap (20-245:41-262)
10 20 30 40
pF1KB6 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCS
:.. : :.. :. .::.: :...:::
CCDS12 FFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB6 TTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNI-SHDTVLQCHFTCSGKQESMNSNVSV
..: ::. ..:.: : . . : : . .. . ... .: ::.:: . .: ...
CCDS12 NSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITA
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB6 YQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP
:.::..::: .: .. :...:..:.: : :. :.. : .:..... :.. . .
CCDS12 YKPPHSVIL--EPPVLK-GRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLD
140 150 160 170 180
170 180 190 200 210 220
pF1KB6 -QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVI-
..: :.. .: .: . : : :.: : . .. ::: : . . . ..
CCDS12 LANVTLTYEFAAGPRDFWQPVICHARLNL---DGLVVRNSSAPITLMLAWSPAPTALASG
190 200 210 220 230 240
230 240 250 260 270
pF1KB6 -IVTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
:...:..::. : .. ::
CCDS12 SIAALVGILLT--VGAAYLCKCLAMKSQA
250 260 270
>>CCDS82290.1 ICAM3 gene_id:3385|Hs108|chr19 (470 aa)
initn: 303 init1: 177 opt: 288 Z-score: 352.6 bits: 73.8 E(32554): 2.6e-13
Smith-Waterman score: 288; 34.2% identity (63.2% similar) in 152 aa overlap (75-225:3-149)
50 60 70 80 90 100
pF1KB6 EVNCSTTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNS
: . .::.. .. . : :.:.: . .:
CCDS82 MGWAAFNLSNVTGNSRILCSVYCNGSQITGSS
10 20 30
110 120 130 140 150 160
pF1KB6 NVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA
:..::. :..: :. : ::..::..:.: : :::. :.: .: : . :
CCDS82 NITVYRLPERVELAPLPPWQPVGQNFTLRCQVEDGSPRTSLTVVLLRWEEELSRQP---A
40 50 60 70 80
170 180 190 200 210 220
pF1KB6 APAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYE-PVSDSQ
. : :.::: :.:.: ::: . ::.. .: ..: . :::..:. . ::. .
CCDS82 VEEPAEVTATV--LASRDDHGAPFSCRTELDMQPQGLGLFVNTSAPRQLRTFVLPVTPPR
90 100 110 120 130 140
230 240 250 260 270
pF1KB6 MVIIVTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
.:
CCDS82 LVAPRFLEVETSWPVDCTLDGLFPASEAQVYLALGDQMLNATVMNHGDTLTATATATARA
150 160 170 180 190 200
>>CCDS42500.1 ICAM4 gene_id:3386|Hs108|chr19 (237 aa)
initn: 196 init1: 95 opt: 280 Z-score: 347.1 bits: 71.8 E(32554): 5.1e-13
Smith-Waterman score: 280; 28.0% identity (62.5% similar) in 200 aa overlap (20-217:41-234)
10 20 30 40
pF1KB6 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCS
:.. : :.. :. .::.: :...:::
CCDS42 FFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB6 TTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNI-SHDTVLQCHFTCSGKQESMNSNVSV
..: ::. ..:.: : . . : : . .. . ... .: ::.:: . .: ...
CCDS42 NSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITA
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB6 YQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP
:.::..:: :.: .. :...:..:.: : :. :.. : .:..... :.. . .
CCDS42 YKPPHSVI--LEPPVLK-GRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLD
140 150 160 170 180
170 180 190 200 210 220
pF1KB6 -QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVII
..: :.. .: .: . : : :.: : . .. ::: : . :
CCDS42 LANVTLTYEFAAGPRDFWQPVICHARLNL---DGLVVRNSSAPITLMLGEAPL
190 200 210 220 230
230 240 250 260 270
pF1KB6 VTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP
275 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:33:21 2016 done: Sat Nov 5 00:33:22 2016
Total Scan time: 2.310 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]