Result of FASTA (ccds) for
pF1KB6385
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6385, 273 aa
1>>>pF1KB6385 273 - 273 aa - 273 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3631+/-0.000824; mu= 14.2197+/- 0.049
mean_var=60.2127+/-12.075, 0's: 0 Z-trim(106.1): 35 B-trim: 0 in 0/51
Lambda= 0.165284
statistics sampled from 8762 (8797) to 8762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.27), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 ( 273) 1764 429.0 1.8e-120
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 ( 277) 1086 267.3 8.4e-72
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 ( 219) 335 88.2 5.5e-18
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 ( 239) 328 86.5 1.9e-17
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 ( 213) 296 78.9 3.4e-15
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 ( 276) 288 77.0 1.6e-14
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 ( 272) 285 76.3 2.6e-14
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 ( 263) 280 75.1 5.8e-14
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 ( 300) 277 74.4 1.1e-13
>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16 (273 aa)
initn: 1764 init1: 1764 opt: 1764 Z-score: 2276.4 bits: 429.0 E(32554): 1.8e-120
Smith-Waterman score: 1764; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)
10 20 30 40 50 60
pF1KB6 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGR
190 200 210 220 230 240
250 260 270
pF1KB6 YHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
:::::::::::::::::::::::::::::::::
CCDS10 YHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
250 260 270
>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9 (277 aa)
initn: 1116 init1: 987 opt: 1086 Z-score: 1402.5 bits: 267.3 E(32554): 8.4e-72
Smith-Waterman score: 1086; 58.3% identity (86.5% similar) in 266 aa overlap (8-271:10-275)
10 20 30 40 50
pF1KB6 MLKPALEPRGGFSFENCQRNASLERVLP--GLKVPHARKTGTTIAGLVFQDGVILGAD
: :::::.::.::: :: . : :.:..:::::::::.:..::..::::
CCDS68 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGAD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 TRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVA
::::. :::::.: :::::.:.:::::::.:::..:::....:..:::.::::: :::.
CCDS68 TRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 TVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAV
:..:.:.: ::::::..::.:..::::.:::.::...:::: ..::....:::. ::.::
CCDS68 TANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 LEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVK
.::.:.:.: : :..:. ::..:::..:::::.:.: :::.:. .:: . :..
CCDS68 FEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT
190 200 210 220 230 240
240 250 260 270
pF1KB6 RSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
: :::. :::::::. . :: .:..:::::.:.
CCDS68 RLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
250 260 270
>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6 (219 aa)
initn: 306 init1: 306 opt: 335 Z-score: 436.3 bits: 88.2 E(32554): 5.5e-18
Smith-Waterman score: 335; 30.5% identity (64.5% similar) in 197 aa overlap (28-221:7-202)
10 20 30 40 50
pF1KB6 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARK--TGTTIAGLVFQDGVILGADTR
: .:.: . ::::: .. :. ::..:.:.:
CCDS47 MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSR
10 20 30
60 70 80 90 100 110
pF1KB6 ATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATV
.. .:... .:. . .::: .: ::::. .. :.: ..:::.. . : : ..
CCDS47 VSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 TRILRQTLFRYQGHVGASLIVGGVDLT-GPQLYGVHPHGSYSRLPFTALGSGQDAALAVL
. ..:. ..:. ..: :.:.: : : :.::. : .: ::. :::. . .
CCDS47 ANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYV
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 EDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKR
. ..:.:. : . . ..:.. .. : .::: . .:: .:
CCDS47 DAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYD
160 170 180 190 200 210
240 250 260 270
pF1KB6 SGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
CCDS47 E
>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17 (239 aa)
initn: 286 init1: 245 opt: 328 Z-score: 426.7 bits: 86.5 E(32554): 1.9e-17
Smith-Waterman score: 328; 29.9% identity (65.8% similar) in 187 aa overlap (38-223:33-219)
10 20 30 40 50 60
pF1KB6 PRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVAD
::::: .. :. ::.::::.:.:. : .:.
CCDS11 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLF
. .:. : .:.:: .: :::.. .. :. .. .:.. .. : : :.. .... .
CCDS11 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT
::. . :..:..: : : :.:.: : . : :. :::.. . .. .. .::
CCDS11 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPG
: . ..:.. .. : .::: . .:...:..
CCDS11 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA
190 200 210 220 230
250 260 270
pF1KB6 TTAVLTQTVKPLTLELVEETVQAMEVE
>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17 (213 aa)
initn: 243 init1: 222 opt: 296 Z-score: 386.3 bits: 78.9 E(32554): 3.4e-15
Smith-Waterman score: 296; 32.2% identity (66.4% similar) in 152 aa overlap (38-188:33-184)
10 20 30 40 50 60
pF1KB6 PRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVAD
::::: .. :. ::.::::.:.:. : .:.
CCDS73 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 KSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLF
. .:. : .:.:: .: :::.. .. :. .. .:.. .. : : :.. .... .
CCDS73 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT
::. . :..:..: : : :.:.: : . : :. :::.. . .. .. .::
CCDS73 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPG
:
CCDS73 KEECLQFTANAFFFYPQLSLWPWSGMAPVEE
190 200 210
>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6 (276 aa)
initn: 269 init1: 162 opt: 288 Z-score: 374.2 bits: 77.0 E(32554): 1.6e-14
Smith-Waterman score: 288; 29.8% identity (58.2% similar) in 225 aa overlap (1-221:37-255)
10 20
pF1KB6 MLKPALE-PRGGFSFENCQR-NASLERVLP
: .: : ::: : : ... :: .
CCDS47 CGAPRGQRPESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQ
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB6 GLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVA
... : ::: .. :: ::: ..:.::. : .. .:. : : . .: :
CCDS47 -IEMAH----GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB6 ADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLTG
:: .. :..:.. .:. : .:.. :......: . . .:.: .: :. .. : : :
CCDS47 ADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKG
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB6 PQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDL
: :: : ::. . . :::. : .:... ..::.. : : : .:.. . :
CCDS47 PGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDS
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB6 GSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEET
::: :. . . :
CCDS47 YSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
250 260 270
>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6 (272 aa)
initn: 269 init1: 162 opt: 285 Z-score: 370.4 bits: 76.3 E(32554): 2.6e-14
Smith-Waterman score: 287; 29.3% identity (58.1% similar) in 222 aa overlap (4-221:42-251)
10 20 30
pF1KB6 MLKPALEPRGGFSFE--NCQRNASLERVLPGLK
:.::: :. . .::...:
CCDS47 TPSSWLTSSLLVEAAPLDDTTLPTPVSSGCPGLEPTEFFQSLGGDGERNVQIE-------
20 30 40 50 60
40 50 60 70 80 90
pF1KB6 VPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADA
. : ::: .. :: ::: ..:.::. : .. .:. : : . .: :::
CCDS47 MAH----GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADC
70 80 90 100 110 120
100 110 120 130 140
pF1KB6 EMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLTGPQL
.. :..:.. .:. : .:.. :......: . . .:.: .: :. .. : : :: :
CCDS47 QYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKGPGL
130 140 150 160 170
150 160 170 180 190 200
pF1KB6 YGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSG
: : ::. . . :::. : .:... ..::.. : : : .:.. . : ::
CCDS47 YYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSG
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB6 GNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEETVQA
: :. . . :
CCDS47 GVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ
240 250 260 270
>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14 (263 aa)
initn: 267 init1: 172 opt: 280 Z-score: 364.2 bits: 75.1 E(32554): 5.8e-14
Smith-Waterman score: 280; 29.1% identity (59.7% similar) in 196 aa overlap (28-221:52-242)
10 20 30 40 50
pF1KB6 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADT
::... : ::: .. :. :::..::.
CCDS95 GGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLH----GTTTLAFKFRHGVIVAADS
30 40 50 60 70
60 70 80 90 100 110
pF1KB6 RATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVAT
::: . .:... .:. : : . :: ::: . :..: . ... : . .. ::.
CCDS95 RATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAA
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 VTRILRQTLFRYQGHVGASL--IVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALA
....: . ...:.: .: :. .. : : :: :: : .:. ..:::. : .
CCDS95 ASKLLANMVYQYKG-MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYG
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 VLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPV
:.. .. .. .: : : .:. . : ::: :. . . :
CCDS95 VMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHE
200 210 220 230 240 250
240 250 260 270
pF1KB6 KRSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
CCDS95 KYSGSTP
260
>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14 (300 aa)
initn: 264 init1: 151 opt: 277 Z-score: 359.4 bits: 74.4 E(32554): 1.1e-13
Smith-Waterman score: 277; 28.5% identity (58.8% similar) in 221 aa overlap (4-221:19-232)
10 20 30 40
pF1KB6 MLKPALEPRGGFSF-ENCQRNASLERVLPGLKVPHARKTGTTIAG
: : ::.. ..:. .. :. . : .. : ::: .
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQ--IHGPRLAH----GTTTLA
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 LVFQDGVILGADTRATNDSVVA-DKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKME
. :. ::: .::::.. : :: :: :. . .. .:..:: :.. ...
CCDS41 FRFRHGVIAAADTRSSCGSYVACPASC-KVIPVHQHLLGTTSGTSADCATWYRVLQRELR
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 LHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLTGPQLYGVHPHGSYSRLP
:. : :. : ::.....: . .:.: . .. . : : .::.:. :. :. .
CCDS41 LRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGD
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 FTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGA
. ..:::. : .::. .. .:. . : .: ::. . : :::.:: . ..:
CCDS41 IFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGW
180 190 200 210 220 230
230 240 250 260 270
pF1KB6 KLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
CCDS41 EHVSRSDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSRM
240 250 260 270 280 290
273 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:45:05 2016 done: Fri Nov 4 20:45:06 2016
Total Scan time: 2.070 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]