Result of FASTA (omim) for
pF1KB6382
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6382, 300 aa
1>>>pF1KB6382 300 - 300 aa - 300 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5557+/-0.000437; mu= 13.5088+/- 0.027
mean_var=63.6858+/-12.337, 0's: 0 Z-trim(109.2): 12 B-trim: 33 in 1/53
Lambda= 0.160714
statistics sampled from 17382 (17388) to 17382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.568), E-opt: 0.2 (0.204), width: 16
Scan time: 6.860
The best scores are: opt bits E(85289)
NP_005722 (OMIM: 604224) actin-related protein 2/3 ( 300) 1951 461.5 9.3e-130
NP_690601 (OMIM: 604224) actin-related protein 2/3 ( 300) 1951 461.5 9.3e-130
XP_016858602 (OMIM: 604224) PREDICTED: actin-relat ( 245) 1605 381.2 1.1e-105
XP_016858603 (OMIM: 604224) PREDICTED: actin-relat ( 186) 1229 294.0 1.5e-79
XP_011508773 (OMIM: 604224) PREDICTED: actin-relat ( 186) 1229 294.0 1.5e-79
XP_016858604 (OMIM: 604224) PREDICTED: actin-relat ( 186) 1229 294.0 1.5e-79
>>NP_005722 (OMIM: 604224) actin-related protein 2/3 com (300 aa)
initn: 1951 init1: 1951 opt: 1951 Z-score: 2450.5 bits: 461.5 E(85289): 9.3e-130
Smith-Waterman score: 1951; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KB6 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
250 260 270 280 290 300
>>NP_690601 (OMIM: 604224) actin-related protein 2/3 com (300 aa)
initn: 1951 init1: 1951 opt: 1951 Z-score: 2450.5 bits: 461.5 E(85289): 9.3e-130
Smith-Waterman score: 1951; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KB6 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
250 260 270 280 290 300
>>XP_016858602 (OMIM: 604224) PREDICTED: actin-related p (245 aa)
initn: 1605 init1: 1605 opt: 1605 Z-score: 2018.4 bits: 381.2 E(85289): 1.1e-105
Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 245 aa overlap (56-300:1-245)
30 40 50 60 70 80
pF1KB6 NKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSFLV
::::::::::::::::::::::::::::::
XP_016 MVSISLKFYKELQAHGADELLKRVYGSFLV
10 20 30
90 100 110 120 130 140
pF1KB6 NPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIH
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB6 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREP
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB6 PLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTR
160 170 180 190 200 210
270 280 290 300
pF1KB6 MRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
:::::::::::::::::::::::::::::::::::
XP_016 MRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
220 230 240
>>XP_016858603 (OMIM: 604224) PREDICTED: actin-related p (186 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1549.1 bits: 294.0 E(85289): 1.5e-79
Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 186 aa overlap (115-300:1-186)
90 100 110 120 130 140
pF1KB6 VNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVI
::::::::::::::::::::::::::::::
XP_016 MLKRNCFASVFEKYFQFQEEGKEGENRAVI
10 20 30
150 160 170 180 190 200
pF1KB6 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHRE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 PPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT
100 110 120 130 140 150
270 280 290 300
pF1KB6 RMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
::::::::::::::::::::::::::::::::::::
XP_016 RMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
160 170 180
>>XP_011508773 (OMIM: 604224) PREDICTED: actin-related p (186 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1549.1 bits: 294.0 E(85289): 1.5e-79
Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 186 aa overlap (115-300:1-186)
90 100 110 120 130 140
pF1KB6 VNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVI
::::::::::::::::::::::::::::::
XP_011 MLKRNCFASVFEKYFQFQEEGKEGENRAVI
10 20 30
150 160 170 180 190 200
pF1KB6 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHRE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 PPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT
100 110 120 130 140 150
270 280 290 300
pF1KB6 RMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
::::::::::::::::::::::::::::::::::::
XP_011 RMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
160 170 180
>>XP_016858604 (OMIM: 604224) PREDICTED: actin-related p (186 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1549.1 bits: 294.0 E(85289): 1.5e-79
Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 186 aa overlap (115-300:1-186)
90 100 110 120 130 140
pF1KB6 VNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVI
::::::::::::::::::::::::::::::
XP_016 MLKRNCFASVFEKYFQFQEEGKEGENRAVI
10 20 30
150 160 170 180 190 200
pF1KB6 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHRE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 PPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHT
100 110 120 130 140 150
270 280 290 300
pF1KB6 RMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
::::::::::::::::::::::::::::::::::::
XP_016 RMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
160 170 180
300 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:43:55 2016 done: Fri Nov 4 20:43:56 2016
Total Scan time: 6.860 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]