FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6382, 300 aa
  1>>>pF1KB6382 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5576+/-0.00104; mu= 13.4593+/- 0.063
 mean_var=58.3182+/-11.392, 0's: 0 Z-trim(102.2): 21  B-trim: 4 in 1/48
 Lambda= 0.167947
 statistics sampled from 6831 (6834) to 6831 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.21), width:  16
 Scan time:  2.320

The best scores are:                                      opt bits E(32554)
CCDS2410.1 ARPC2 gene_id:10109|Hs108|chr2          ( 300) 1951 481.3 3.8e-136


>>CCDS2410.1 ARPC2 gene_id:10109|Hs108|chr2               (300 aa)
 initn: 1951 init1: 1951 opt: 1951  Z-score: 2557.8  bits: 481.3 E(32554): 3.8e-136
Smith-Waterman score: 1951; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KB6 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 INLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGKTFSSR
              250       260       270       280       290       300




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:43:54 2016 done: Fri Nov  4 20:43:55 2016
 Total Scan time:  2.320 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]