FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6380, 299 aa
  1>>>pF1KB6380 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9108+/-0.000383; mu= -0.4141+/- 0.024
 mean_var=230.7223+/-44.241, 0's: 0 Z-trim(120.4): 8  B-trim: 0 in 0/57
 Lambda= 0.084436
 statistics sampled from 35620 (35628) to 35620 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.418), width:  16
 Scan time:  9.020

The best scores are:                                      opt bits E(85289)
NP_006315 (OMIM: 608108) craniofacial development  ( 299) 1904 244.3 2.1e-64
XP_011521116 (OMIM: 608108) PREDICTED: craniofacia ( 223) 1381 180.5 2.6e-45
XP_011521117 (OMIM: 608108) PREDICTED: craniofacia ( 220) 1375 179.8 4.2e-45


>>NP_006315 (OMIM: 608108) craniofacial development prot  (299 aa)
 initn: 1904 init1: 1904 opt: 1904  Z-score: 1277.1  bits: 244.3 E(85289): 2.1e-64
Smith-Waterman score: 1904; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB6 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMST
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 LEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSKMKP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSKMKP
              250       260       270       280       290         

>>XP_011521116 (OMIM: 608108) PREDICTED: craniofacial de  (223 aa)
 initn: 1447 init1: 1381 opt: 1381  Z-score: 934.5  bits: 180.5 E(85289): 2.6e-45
Smith-Waterman score: 1381; 99.1% identity (99.5% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KB6 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMST
       ::::::::::::::::::::::::::::::::::::: :.                    
XP_011 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGKKKFDA                 
              190       200       210       220                    

              250       260       270       280       290         
pF1KB6 LEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSKMKP

>>XP_011521117 (OMIM: 608108) PREDICTED: craniofacial de  (220 aa)
 initn: 1375 init1: 1375 opt: 1375  Z-score: 930.7  bits: 179.8 E(85289): 4.2e-45
Smith-Waterman score: 1375; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB6 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMST
       :::::::::::::::::::::::::::::::::::::                       
XP_011 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGCVI                    
              190       200       210       220                    

              250       260       270       280       290         
pF1KB6 LEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSKMKP




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:42:13 2016 done: Fri Nov  4 20:42:14 2016
 Total Scan time:  9.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]