FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6380, 299 aa
  1>>>pF1KB6380 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8307+/-0.00097; mu= 0.4891+/- 0.059
 mean_var=217.9111+/-42.791, 0's: 0 Z-trim(112.3): 6  B-trim: 0 in 0/53
 Lambda= 0.086883
 statistics sampled from 13085 (13088) to 13085 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.402), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS10916.1 CFDP1 gene_id:10428|Hs108|chr16        ( 299) 1904 250.9 8.7e-67


>>CCDS10916.1 CFDP1 gene_id:10428|Hs108|chr16             (299 aa)
 initn: 1904 init1: 1904 opt: 1904  Z-score: 1312.5  bits: 250.9 E(32554): 8.7e-67
Smith-Waterman score: 1904; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB6 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEEFDSEDFSTSEEDEDYVPSGGEYSEDDVNELVKEDEVDGEEQTQKTQGKKRKAQSIPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKRRQGGLSLEEEEEEDANSESEGSSSEEEDDAAEQEKGIGSEDARKKKEDELWASFLND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VGPKSKVPPSTQVKKGEETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAKKQKMST
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 LEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSKMKP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LEKSKLDWESFKEEEGIGEELAIHNRGKEGYIERKAFLDRVDHRQFEIERDLRLSKMKP
              250       260       270       280       290         




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:42:12 2016 done: Fri Nov  4 20:42:13 2016
 Total Scan time:  2.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]