FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6377, 271 aa
  1>>>pF1KB6377 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1392+/-0.000942; mu= 10.0638+/- 0.057
 mean_var=62.4488+/-12.518, 0's: 0 Z-trim(103.3): 24  B-trim: 0 in 0/50
 Lambda= 0.162298
 statistics sampled from 7330 (7340) to 7330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.225), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS2101.1 IL1A gene_id:3552|Hs108|chr2            ( 271) 1747 417.8 4.1e-117


>>CCDS2101.1 IL1A gene_id:3552|Hs108|chr2                 (271 aa)
 initn: 1747 init1: 1747 opt: 1747  Z-score: 2216.1  bits: 417.8 E(32554): 4.1e-117
Smith-Waterman score: 1747; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KB6 MAKVPDMFEDLKNCYSENEEDSSSIDHLSLNQKSFYHVSYGPLHEGCMDQSVSLSISETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAKVPDMFEDLKNCYSENEEDSSSIDHLSLNQKSFYHVSYGPLHEGCMDQSVSLSISETS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KTSKLTFKESMVVVATNGKVLKKRRLSLSQSITDDDLEAIANDSEEEIIKPRSAPFSFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KTSKLTFKESMVVVATNGKVLKKRRLSLSQSITDDDLEAIANDSEEEIIKPRSAPFSFLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 NVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 NVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TVILRISKTQLYVTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 TVILRISKTQLYVTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHP
              190       200       210       220       230       240

              250       260       270 
pF1KB6 NLFIATKQDYWVCLAGGPPSITDFQILENQA
       :::::::::::::::::::::::::::::::
CCDS21 NLFIATKQDYWVCLAGGPPSITDFQILENQA
              250       260       270 




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:03:57 2016 done: Sat Nov  5 01:03:57 2016
 Total Scan time:  1.900 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]