Result of FASTA (omim) for
pF1KB6370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6370, 298 aa
1>>>pF1KB6370 298 - 298 aa - 298 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9960+/-0.000332; mu= 17.5650+/- 0.021
mean_var=74.5287+/-15.034, 0's: 0 Z-trim(115.7): 148 B-trim: 33 in 1/55
Lambda= 0.148564
statistics sampled from 26226 (26386) to 26226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.309), width: 16
Scan time: 7.620
The best scores are: opt bits E(85289)
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 2062 451.1 1.3e-126
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 719 163.3 6.5e-40
XP_011512859 (OMIM: 106300,142830,608579) PREDICTE ( 323) 709 161.1 2.6e-39
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 698 158.7 1.4e-38
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 698 158.8 1.4e-38
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 698 158.8 1.4e-38
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 694 157.9 2.7e-38
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 679 154.7 2.5e-37
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 663 151.3 2.6e-36
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 663 151.3 2.6e-36
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 663 151.3 2.8e-36
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 663 151.3 3e-36
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 663 151.3 3e-36
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 663 151.3 3.1e-36
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 663 151.3 3.1e-36
XP_016885777 (OMIM: 142800,608579) PREDICTED: HLA ( 362) 661 150.8 3.6e-36
XP_005275388 (OMIM: 142800,608579) PREDICTED: HLA ( 391) 661 150.9 3.8e-36
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 658 150.2 5.3e-36
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 658 150.2 5.4e-36
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 649 148.3 2e-35
NP_001229971 (OMIM: 142840,177900,609423) HLA clas ( 366) 641 146.6 7.1e-35
NP_002108 (OMIM: 142840,177900,609423) HLA class I ( 366) 635 145.3 1.7e-34
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 627 143.5 5.2e-34
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 618 141.6 2.1e-33
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 618 141.6 2.1e-33
XP_016866296 (OMIM: 143010) PREDICTED: HLA class I ( 399) 606 139.1 1.4e-32
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 606 139.1 1.4e-32
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 541 125.0 1.6e-28
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 503 116.8 4.3e-26
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 488 113.6 3.7e-25
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 488 113.7 4.8e-25
NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 453 106.3 9.5e-23
NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 453 106.3 9.5e-23
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 434 102.2 1.5e-21
NP_001181929 (OMIM: 600764) major histocompatibili ( 249) 414 97.8 2.4e-20
NP_001181964 (OMIM: 600764) major histocompatibili ( 214) 409 96.6 4.4e-20
XP_006711349 (OMIM: 600764) PREDICTED: major histo ( 312) 408 96.6 6.8e-20
NP_001091948 (OMIM: 143110) HLA class I histocompa ( 254) 387 92.0 1.3e-18
NP_005922 (OMIM: 602436) MHC class I polypeptide-r ( 383) 387 92.1 1.8e-18
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 384 91.4 2.5e-18
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 374 89.4 1.2e-17
NP_001276089 (OMIM: 602436) MHC class I polypeptid ( 351) 371 88.7 1.8e-17
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 370 88.4 1.8e-17
NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 343 82.6 1.1e-15
NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 332 80.3 5.5e-15
NP_001297142 (OMIM: 600764) major histocompatibili ( 178) 322 77.9 1.6e-14
NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 303 74.1 4.3e-13
XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 303 74.1 4.3e-13
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 299 73.1 6.4e-13
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 299 73.1 6.5e-13
>>NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein pre (298 aa)
initn: 2062 init1: 2062 opt: 2062 Z-score: 2394.3 bits: 451.1 E(85289): 1.3e-126
Smith-Waterman score: 2062; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNSKDRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNSKDRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 FGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVHWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVHWT
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 RAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPWEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPWEAS
250 260 270 280 290
>>NP_005505 (OMIM: 106300,142830,608579) major histocomp (362 aa)
initn: 572 init1: 209 opt: 719 Z-score: 837.6 bits: 163.3 E(85289): 6.5e-40
Smith-Waterman score: 719; 39.3% identity (66.9% similar) in 305 aa overlap (1-298:1-301)
10 20 30 40 50
pF1KB6 MVRMVPVLLSLLLLLGPAVP-QENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFF
:. :.: ..::::. :. :. : .:. :.::..:. . : : ..: ..: ::
NP_005 MLVMAPR--TVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RYNSK--DRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSN-GSHV
:..: . . .: . : . :: : : ...:. ::. . :.:... :::.:. :::.
NP_005 RFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LQGRFGCEI-ENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYV
::. .::.. ..: . .: ::::::: .:... .:. : :::::..::::
NP_005 LQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 QRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKI
:: .:::: :: ::.::. .:. :.: :::.. :: : .. :.: : :::..:
NP_005 QR-RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 DVHWTRAGE--VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVV
. : : :: .:. :: .. :. :.:.:..:.:: . :.::::: .: .::..
NP_005 TLTWQRDGEDQTQDTELV-ETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL
240 250 260 270 280 290
pF1KB6 PWEAS
:: :
NP_005 RWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGS
300 310 320 330 340 350
>>XP_011512859 (OMIM: 106300,142830,608579) PREDICTED: m (323 aa)
initn: 562 init1: 208 opt: 709 Z-score: 826.6 bits: 161.1 E(85289): 2.6e-39
Smith-Waterman score: 709; 39.1% identity (66.9% similar) in 302 aa overlap (1-295:1-298)
10 20 30 40 50
pF1KB6 MVRMVPVLLSLLLLLGPAVP-QENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFF
:. :.: ..::::. :. :. : .:. :.::..:. . : : ..: ..: ::
XP_011 MLVMAPR--TVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RYNSK--DRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSN-GSHV
:..: . . .: . : . :: : : ...:. ::. . :.:... :::.:. :::.
XP_011 RFDSDAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LQGRFGCEI-ENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYV
::. .::.. ..: . .: ::::::: .:... .:. : :::::..::::
XP_011 LQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 QRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKI
:: .:::: :: ::.::. .:. :.: :::.. :: : .. :.: : :::..:
XP_011 QR-RAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 DVHWTRAGE--VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVV
. : : :: .:. :: .. :. :.:.:..:.:: . :.::::: .: .::..
XP_011 TLTWQRDGEDQTQDTELV-ETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTL
240 250 260 270 280 290
pF1KB6 PWEAS
:
XP_011 RWGGKGGSYSQAACSDSAQGSDVSLTA
300 310 320
>>NP_001287678 (OMIM: 104300,176100,176200,235200,612635 (337 aa)
initn: 617 init1: 311 opt: 698 Z-score: 813.6 bits: 158.7 E(85289): 1.4e-38
Smith-Waterman score: 698; 37.7% identity (65.3% similar) in 300 aa overlap (3-298:4-300)
10 20 30 40 50
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFF
: :.:: ::.:: :: : .:: :.. : :.. . :.::: ..: :
NP_001 MGPRARPALL-LLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RYNSKDRKSQPMGLWRQVE-GMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQ
:. ..:. .: : . . . . : : :: :. . .: . :.: .: :. ::.::
NP_001 FYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 GRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRA
.:::.... :. ..::: :::.:..:: . : .: : :: .:: . . ...
NP_001 VILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 KAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVH
.::::..::: :.. :. ....::.: :: : :: :.. . :.: : ..:: .: ..
NP_001 RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVT-HHVTSSVTTLRCRALNYYPQNITMK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 WTRAGE---VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPW
: . . ..: : . ::: ::.::::.:...:::: . :.:.:.: .: :::.: :
NP_001 WLKDKQPMDAKEFEPK-DVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIW
240 250 260 270 280 290
pF1KB6 EAS
: :
NP_001 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSSF
300 310 320 330
>>XP_011512845 (OMIM: 104300,176100,176200,235200,612635 (348 aa)
initn: 617 init1: 311 opt: 698 Z-score: 813.5 bits: 158.8 E(85289): 1.4e-38
Smith-Waterman score: 698; 37.7% identity (65.3% similar) in 300 aa overlap (3-298:4-300)
10 20 30 40 50
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFF
: :.:: ::.:: :: : .:: :.. : :.. . :.::: ..: :
XP_011 MGPRARPALL-LLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RYNSKDRKSQPMGLWRQVE-GMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQ
:. ..:. .: : . . . . : : :: :. . .: . :.: .: :. ::.::
XP_011 FYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 GRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRA
.:::.... :. ..::: :::.:..:: . : .: : :: .:: . . ...
XP_011 VILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 KAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVH
.::::..::: :.. :. ....::.: :: : :: :.. . :.: : ..:: .: ..
XP_011 RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVT-HHVTSSVTTLRCRALNYYPQNITMK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 WTRAGE---VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPW
: . . ..: : . ::: ::.::::.:...:::: . :.:.:.: .: :::.: :
XP_011 WLKDKQPMDAKEFEPK-DVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIW
240 250 260 270 280 290
pF1KB6 EAS
: :
XP_011 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERF
300 310 320 330 340
>>NP_000401 (OMIM: 104300,176100,176200,235200,612635,61 (348 aa)
initn: 617 init1: 311 opt: 698 Z-score: 813.5 bits: 158.8 E(85289): 1.4e-38
Smith-Waterman score: 698; 37.7% identity (65.3% similar) in 300 aa overlap (3-298:4-300)
10 20 30 40 50
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFF
: :.:: ::.:: :: : .:: :.. : :.. . :.::: ..: :
NP_000 MGPRARPALL-LLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFV
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 RYNSKDRKSQPMGLWRQVE-GMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQ
:. ..:. .: : . . . . : : :: :. . .: . :.: .: :. ::.::
NP_000 FYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHTLQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 GRFGCEIENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRA
.:::.... :. ..::: :::.:..:: . : .: : :: .:: . . ...
NP_000 VILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 KAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVH
.::::..::: :.. :. ....::.: :: : :: :.. . :.: : ..:: .: ..
NP_000 RAYLERDCPAQLQQLLELGRGVLDQQVPPLVKVT-HHVTSSVTTLRCRALNYYPQNITMK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 WTRAGE---VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPW
: . . ..: : . ::: ::.::::.:...:::: . :.:.:.: .: :::.: :
NP_000 WLKDKQPMDAKEFEPK-DVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLDQPLIVIW
240 250 260 270 280 290
pF1KB6 EAS
: :
NP_000 EPSPSGTLVIGVISGIAVFVVILFIGILFIILRKRQGSRGAMGHYVLAERE
300 310 320 330 340
>>NP_001229687 (OMIM: 142800,608579) HLA class I histoco (365 aa)
initn: 444 init1: 218 opt: 694 Z-score: 808.5 bits: 157.9 E(85289): 2.7e-38
Smith-Waterman score: 694; 38.5% identity (66.1% similar) in 304 aa overlap (1-298:1-301)
10 20 30 40 50 60
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFR
:. :.: : :::: : . .. : .:. :..:..:. . : : :.: ..: :: :
NP_001 MAVMAPRTL-LLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVR
10 20 30 40 50
70 80 90 100 110
pF1KB6 YNSK--DRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDS-NGSHVL
..: ..: .: . : . :: : : :... .::. . .: . :::.: .:::..
NP_001 FDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 QGRFGCEI-ENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQ
: .::.. ..: .. . ::::::: .:... .:. : ::::::.:::: . :
NP_001 QIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 RAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKID
: ..::: .: ::.::. .:. :.: :::.. .: : .. :.: : :::..:
NP_001 R-RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEIT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 VHWTRAGE--VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVP
. : : :: .:. :: .. :.::.:.:..:.:: . :.::::: .: .::..
NP_001 LTWQRDGEDQTQDTELV-ETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLR
240 250 260 270 280 290
pF1KB6 WEAS
:: :
NP_001 WELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSD
300 310 320 330 340 350
>>NP_002107 (OMIM: 142800,608579) HLA class I histocompa (365 aa)
initn: 425 init1: 204 opt: 679 Z-score: 791.2 bits: 154.7 E(85289): 2.5e-37
Smith-Waterman score: 679; 39.0% identity (64.0% similar) in 308 aa overlap (1-298:1-301)
10 20 30 40 50 60
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFR
:. :.: : :::: : . .. : .:. :..:..:. . : : :.: ..: :: :
NP_002 MAVMAPRTL-LLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVR
10 20 30 40 50
70 80 90 100 110
pF1KB6 YNSKDRKSQ---PMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSN-GSHV
..: : :: : . : . :: : : :... ::. . : . :::.:. :::.
NP_002 FDS-DAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 LQGRFGCEIENNRSSGAFWKYY----YDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEP
.: .::.. :.: : . : ::::::: .:... .:. : ::::::.::::
NP_002 IQIMYGCDVG---SDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAH
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 VYVQRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYP
... .:::. : ::.::. .:. :.: :::.. .: : .. :.: : :::
NP_002 -EAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 GKIDVHWTRAGE--VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQP
..: . : : :: .:. :: .. :.::.:.:..:.:: . :.::::: .: .:
NP_002 AEITLTWQRDGEDQTQDTELV-ETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKP
240 250 260 270 280 290
pF1KB6 LVVPWEAS
:.. :: :
NP_002 LTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSA
300 310 320 330 340 350
>>XP_011512866 (OMIM: 143110) PREDICTED: HLA class I his (343 aa)
initn: 529 init1: 214 opt: 663 Z-score: 773.0 bits: 151.3 E(85289): 2.6e-36
Smith-Waterman score: 663; 37.2% identity (65.4% similar) in 301 aa overlap (4-298:1-298)
10 20 30 40 50 60
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFR
:.: : :::: : . .. : .:: :. :..:. . : . :. ..: ::.:
XP_011 MAPRSL-LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLR
10 20 30 40 50
70 80 90 100 110
pF1KB6 YNSKDR--KSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSN-GSHVL
..: . .: : . :: . :. . :: . .:..... ::.:. :::.:
XP_011 FDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 QGRFGCEI-ENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQ
:: ::.. ..: .. .. ::::::: .:... .:. : .::::.. .::: :..
XP_011 QGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 RAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKID
. ..::: :: ::.::. .:. :.: :::.. :. : .. :.: : :::..:
XP_011 EFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEIT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 VHWTRAGE--VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVP
. : : :: .:. :: .. :.::.:.:..:.::: . :.::::: .: :::..
XP_011 LTWQRDGEEQTQDTELV-ETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILR
240 250 260 270 280 290
pF1KB6 WEAS
:: :
XP_011 WEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSGKLTHTGVQ
300 310 320 330 340
>>NP_061823 (OMIM: 143110) HLA class I histocompatibilit (346 aa)
initn: 529 init1: 214 opt: 663 Z-score: 773.0 bits: 151.3 E(85289): 2.6e-36
Smith-Waterman score: 663; 37.2% identity (65.4% similar) in 301 aa overlap (4-298:1-298)
10 20 30 40 50 60
pF1KB6 MVRMVPVLLSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFR
:.: : :::: : . .. : .:: :. :..:. . : . :. ..: ::.:
NP_061 MAPRSL-LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLR
10 20 30 40 50
70 80 90 100 110
pF1KB6 YNSKDR--KSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSN-GSHVL
..: . .: : . :: . :. . :: . .:..... ::.:. :::.:
NP_061 FDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 QGRFGCEI-ENNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQ
:: ::.. ..: .. .. ::::::: .:... .:. : .::::.. .::: :..
NP_061 QGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 RAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKID
. ..::: :: ::.::. .:. :.: :::.. :. : .. :.: : :::..:
NP_061 EFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEIT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 VHWTRAGE--VQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVP
. : : :: .:. :: .. :.::.:.:..:.::: . :.::::: .: :::..
NP_061 LTWQRDGEEQTQDTELV-ETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILR
240 250 260 270 280 290
pF1KB6 WEAS
:: :
NP_061 WEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV
300 310 320 330 340
298 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:40:59 2016 done: Fri Nov 4 20:41:00 2016
Total Scan time: 7.620 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]