FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6367, 269 aa
  1>>>pF1KB6367 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7797+/-0.000863; mu= 12.0184+/- 0.052
 mean_var=67.0058+/-13.165, 0's: 0 Z-trim(105.7): 25  B-trim: 0 in 0/50
 Lambda= 0.156682
 statistics sampled from 8573 (8591) to 8573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS2102.1 IL1B gene_id:3553|Hs108|chr2            ( 269) 1820 420.3 7.2e-118


>>CCDS2102.1 IL1B gene_id:3553|Hs108|chr2                 (269 aa)
 initn: 1820 init1: 1820 opt: 1820  Z-score: 2229.6  bits: 420.3 E(32554): 7.2e-118
Smith-Waterman score: 1820; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KB6 MAEVPELASEMMAYYSGNEDDLFFEADGPKQMKCSFQDLDLCPLDGGIQLRISDHHYSKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAEVPELASEMMAYYSGNEDDLFFEADGPKQMKCSFQDLDLCPLDGGIQLRISDHHYSKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FRQAASVVVAMDKLRKMLVPCPQTFQENDLSTFFPFIFEEEPIFFDTWDNEAYVHDAPVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FRQAASVVVAMDKLRKMLVPCPQTFQENDLSTFFPFIFEEEPIFFDTWDNEAYVHDAPVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SLNCTLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SLNCTLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEKRFVFNKIEINNKLEFESAQFPNWYIST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEKRFVFNKIEINNKLEFESAQFPNWYIST
              190       200       210       220       230       240

              250       260         
pF1KB6 SQAENMPVFLGGTKGGQDITDFTMQFVSS
       :::::::::::::::::::::::::::::
CCDS21 SQAENMPVFLGGTKGGQDITDFTMQFVSS
              250       260         




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:48:36 2016 done: Fri Nov  4 22:48:37 2016
 Total Scan time:  2.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]