Result of FASTA (ccds) for
pF1KB6356
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6356, 295 aa
1>>>pF1KB6356 295 - 295 aa - 295 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8283+/-0.000903; mu= -2.4311+/- 0.054
mean_var=336.7306+/-68.466, 0's: 0 Z-trim(117.2): 12 B-trim: 182 in 1/53
Lambda= 0.069893
statistics sampled from 17941 (17951) to 17941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.551), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS42253.1 PLSCR3 gene_id:57048|Hs108|chr17 ( 295) 2118 226.3 2.2e-59
CCDS3135.1 PLSCR1 gene_id:5359|Hs108|chr3 ( 318) 1038 117.4 1.4e-26
CCDS75029.1 PLSCR2 gene_id:57047|Hs108|chr3 ( 293) 913 104.8 8.1e-23
CCDS56284.1 PLSCR2 gene_id:57047|Hs108|chr3 ( 297) 913 104.8 8.2e-23
CCDS3134.1 PLSCR2 gene_id:57047|Hs108|chr3 ( 224) 894 102.7 2.6e-22
CCDS46931.1 PLSCR5 gene_id:389158|Hs108|chr3 ( 271) 851 98.5 5.9e-21
CCDS82853.1 PLSCR5 gene_id:389158|Hs108|chr3 ( 259) 812 94.5 8.7e-20
CCDS3133.1 PLSCR4 gene_id:57088|Hs108|chr3 ( 329) 724 85.8 4.8e-17
>>CCDS42253.1 PLSCR3 gene_id:57048|Hs108|chr17 (295 aa)
initn: 2118 init1: 2118 opt: 2118 Z-score: 1179.7 bits: 226.3 E(32554): 2.2e-59
Smith-Waterman score: 2118; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KB6 MAGYLPPKGYAPSPPPPYPVTPGYPEPALHPGPGQAPVPAQVPAPAPGFALFPSPGPVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAGYLPPKGYAPSPPPPYPVTPGYPEPALHPGPGQAPVPAQVPAPAPGFALFPSPGPVAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GSAAPFLPLPGVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGAGQPLGQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSAAPFLPLPGVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGAGQPLGQAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSCCPCGLQEMEVQAPPGTTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSCCPCGLQEMEVQAPPGTTI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRDESRSVGRISKQW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRDESRSVGRISKQW
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 GGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRGGAGPSAVTS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRGGAGPSAVTS
250 260 270 280 290
>>CCDS3135.1 PLSCR1 gene_id:5359|Hs108|chr3 (318 aa)
initn: 1090 init1: 956 opt: 1038 Z-score: 590.8 bits: 117.4 E(32554): 1.4e-26
Smith-Waterman score: 1038; 51.5% identity (73.6% similar) in 299 aa overlap (3-286:20-309)
10 20 30
pF1KB6 MAGYLPPKGYAPSP---PPPYPVTPG----YPEP-ALHPGPGQ
:: ::. : :. :: : :: :: : : : :::
CCDS31 MDKQNSQMNASHPETNLPVGY-PPQ-YPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGP
10 20 30 40 50
40 50 60 70 80
pF1KB6 A--PVPAQVPAPAPGFALFPSPGPVALGSAA-PFLPLP----GVPSGLEFLVQIDQILIH
: ::: : :. . .. .: .:.:. :..: : . : :::.: ::::::::
CCDS31 AGFPVPNQ---PVYNQPVYNQP----VGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIH
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB6 QKAERVETFLGWETCNRYELRSGAGQPLGQAAEESNCCARLCCGARRPLRVRLADPGDRE
:. : .:.. :.:: :.::.... :: . :::...::.: ::: ::. .:. : .:
CCDS31 QQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQE
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB6 VLRLLRPLHCGCSCCPCGLQEMEVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVV
:. : :::.:. :::: :::.:.:::::. ::.:.::::: ::::.::. :. ::..
CCDS31 VITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKIS
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB6 GPCWTCGCGTDTNFEVKTRDESRSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKA
::: .:.: :..::.:. ::. ::.:::.: :..:::.::::.::.::::::::..::
CCDS31 GPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKA
240 250 260 270 280 290
270 280 290
pF1KB6 VLLGATFLIDYMFFEKRGGAGPSAVTS
:..:: ::::.::::. :
CCDS31 VMIGACFLIDFMFFESTGSQEQKSGVW
300 310
>>CCDS75029.1 PLSCR2 gene_id:57047|Hs108|chr3 (293 aa)
initn: 963 init1: 876 opt: 913 Z-score: 523.1 bits: 104.8 E(32554): 8.1e-23
Smith-Waterman score: 932; 50.0% identity (73.5% similar) in 264 aa overlap (22-284:39-291)
10 20 30 40 50
pF1KB6 MAGYLPPKGYAPSPPPPYPVTPGYPEPALHPGPGQAPVPAQV-PAPAPGFA
:: . : : : : .:.: :. :
CCDS75 PGPPGHIVYPKHQAGHTGKQADHLGSQAFYPGRQHDYLVPPAGTAGIPVQNQPGRPEGVP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LFPSPGPVALGSAAPFLPLPGVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRS
.:.: : :: . : :::.: :::.:::::. : .:.....:. : ::...
CCDS75 WMPAPPP----------PL-NCPPGLEYLSQIDMILIHQQIELLEVLFSFESSNMYEIKN
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 GAGQPLGQAAEESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSCCPCGLQEM
. :: . :::..: : : ::: ::. .:..: :::. : :::.:.: :::: :::.
CCDS75 SFGQRIYFAAEDTNFCIRNCCGRSRPFTLRITDNVGREVITLERPLRCNCCCCPCCLQEI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 EVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRDES
:.:::::. .:.: ::::: : ::.:.. :. ::.. ::: .:.: . ..::. . ::.
CCDS75 EIQAPPGVPVGYVTQTWHPCLTKFTIKNQKREDVLKISGPCIVCSCIAGVDFEITSLDEQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 RSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRGGAGP
::::::.:.:..:::.::::.::.::: ::::..:::..:: :::::::::.
CCDS75 IVVGRISKHWSGFLREAFTDADNFGIQFPRDLDVKMKAVMIGACFLIDYMFFERTR
240 250 260 270 280 290
pF1KB6 SAVTS
>>CCDS56284.1 PLSCR2 gene_id:57047|Hs108|chr3 (297 aa)
initn: 963 init1: 876 opt: 913 Z-score: 523.0 bits: 104.8 E(32554): 8.2e-23
Smith-Waterman score: 932; 50.0% identity (73.5% similar) in 264 aa overlap (22-284:43-295)
10 20 30 40 50
pF1KB6 MAGYLPPKGYAPSPPPPYPVTPGYPEPALHPGPGQAPVPAQV-PAPAPGFA
:: . : : : : .:.: :. :
CCDS56 SRPPGHIVYPKHQAGHTGKQADHLGSQAFYPGRQHDYLVPPAGTAGIPVQNQPGRPEGVP
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 LFPSPGPVALGSAAPFLPLPGVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRS
.:.: : :: . : :::.: :::.:::::. : .:.....:. : ::...
CCDS56 WMPAPPP----------PL-NCPPGLEYLSQIDMILIHQQIELLEVLFSFESSNMYEIKN
80 90 100 110 120
120 130 140 150 160 170
pF1KB6 GAGQPLGQAAEESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSCCPCGLQEM
. :: . :::..: : : ::: ::. .:..: :::. : :::.:.: :::: :::.
CCDS56 SFGQRIYFAAEDTNFCIRNCCGRSRPFTLRITDNVGREVITLERPLRCNCCCCPCCLQEI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 EVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRDES
:.:::::. .:.: ::::: : ::.:.. :. ::.. ::: .:.: . ..::. . ::.
CCDS56 EIQAPPGVPVGYVTQTWHPCLTKFTIKNQKREDVLKISGPCIVCSCIAGVDFEITSLDEQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 RSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRGGAGP
::::::.:.:..:::.::::.::.::: ::::..:::..:: :::::::::.
CCDS56 IVVGRISKHWSGFLREAFTDADNFGIQFPRDLDVKMKAVMIGACFLIDYMFFERTR
250 260 270 280 290
pF1KB6 SAVTS
>>CCDS3134.1 PLSCR2 gene_id:57047|Hs108|chr3 (224 aa)
initn: 979 init1: 876 opt: 894 Z-score: 514.2 bits: 102.7 E(32554): 2.6e-22
Smith-Waterman score: 894; 54.8% identity (80.1% similar) in 221 aa overlap (64-284:3-222)
40 50 60 70 80 90
pF1KB6 GQAPVPAQVPAPAPGFALFPSPGPVALGSAAPFLPLPGVPSGLEFLVQIDQILIHQKAER
:: :: . : :::.: :::.:::::. :
CCDS31 MPAPPPPL-NCPPGLEYLSQIDMILIHQQIEL
10 20 30
100 110 120 130 140 150
pF1KB6 VETFLGWETCNRYELRSGAGQPLGQAAEESNCCARLCCGARRPLRVRLADPGDREVLRLL
.:.....:. : ::.... :: . :::..: : : ::: ::. .:..: :::. :
CCDS31 LEVLFSFESSNMYEIKNSFGQRIYFAAEDTNFCIRNCCGRSRPFTLRITDNVGREVITLE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB6 RPLHCGCSCCPCGLQEMEVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWT
:::.:.: :::: :::.:.:::::. .:.: ::::: : ::.:.. :. ::.. ::: .
CCDS31 RPLRCNCCCCPCCLQEIEIQAPPGVPVGYVTQTWHPCLTKFTIKNQKREDVLKISGPCIV
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB6 CGCGTDTNFEVKTRDESRSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGA
:.: . ..::. . ::. ::::::.:.:..:::.::::.::.::: ::::..:::..::
CCDS31 CSCIAGVDFEITSLDEQIVVGRISKHWSGFLREAFTDADNFGIQFPRDLDVKMKAVMIGA
160 170 180 190 200 210
280 290
pF1KB6 TFLIDYMFFEKRGGAGPSAVTS
:::::::::.
CCDS31 CFLIDYMFFERTR
220
>>CCDS46931.1 PLSCR5 gene_id:389158|Hs108|chr3 (271 aa)
initn: 827 init1: 827 opt: 851 Z-score: 489.7 bits: 98.5 E(32554): 5.9e-21
Smith-Waterman score: 851; 49.2% identity (74.0% similar) in 258 aa overlap (31-283:14-265)
10 20 30 40 50
pF1KB6 MAGYLPPKGYAPSPPPPYPVTPGYPEPALHPG--PGQAPVPAQ-VPAPA-PGFALFPSPG
:: :: :: : : .:: . :: .
CCDS46 MASKDAQNQRRGLPGFLPG-APDPDQSLPASSNPGNQAWQLSL
10 20 30 40
60 70 80 90 100 110
pF1KB6 PVALGSAAPFLPLPGVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGAGQPL
:. . ::: ..: :::.: :.: :.:::..: . .:: :: :.::.... :: .
CCDS46 PLP----SSFLPTVSLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRI
50 60 70 80 90
120 130 140 150 160 170
pF1KB6 GQAAEESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSC-CPCGLQEMEVQAP
:.::: : : :.. : .:..: . :::. . :::.:. :: ::: :::.:.:::
CCDS46 YFAVEESICFNRTFCSTLRSCTLRITDNSGREVITVNRPLRCN-SCWCPCYLQELEIQAP
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 PGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRDESRSVGR
::: .:.: : : ::::::.::.:... .:..:::: :::: :..::::: .:. ..:.
CCDS46 PGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGK
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB6 ISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRGGAGPSAVTS
::: :.:.: ...:.::.::.. : :::: :::...:: ::.:.::::
CCDS46 ISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAMIGACFLFDFMFFEHSLAGL
220 230 240 250 260 270
>>CCDS82853.1 PLSCR5 gene_id:389158|Hs108|chr3 (259 aa)
initn: 774 init1: 774 opt: 812 Z-score: 468.7 bits: 94.5 E(32554): 8.7e-20
Smith-Waterman score: 812; 49.2% identity (75.0% similar) in 248 aa overlap (38-283:13-253)
10 20 30 40 50 60
pF1KB6 KGYAPSPPPPYPVTPGYPEPALHPGPGQAPVPAQVP-APAPGFALFPSPGPVALGSAAPF
.:. .: :: : .: : .: :. :
CCDS82 MASKDAQNQRRGLPGFLPGAPDPDQSLPASSNP---GNQAWQ
10 20 30
70 80 90 100 110 120
pF1KB6 LPLPGVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGAGQPLGQAAEESNCC
: :: .::. :: .: :.:::..: . .:: :: :.::.... :: . :.::: :
CCDS82 LSLP-LPSS--FLPTLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICF
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 ARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSC-CPCGLQEMEVQAPPGTTIGHVLQ
: :.. : .:..: . :::. . :::.:. :: ::: :::.:.:::::: .:.: :
CCDS82 NRTFCSTLRSCTLRITDNSGREVITVNRPLRCN-SCWCPCYLQELEIQAPPGTIVGYVTQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRDESRSVGRISKQWGGLVR
: ::::::.::.:... .:..:::: :::: :..::::: .:. ..:.::: :.:.:
CCDS82 KWDPFLPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVN
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 EALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRGGAGPSAVTS
...:.::.::.. : :::: :::...:: ::.:.::::
CCDS82 DVFTNADNFGIHVPADLDVTVKAAMIGACFLFDFMFFEHSLAGL
220 230 240 250
>>CCDS3133.1 PLSCR4 gene_id:57088|Hs108|chr3 (329 aa)
initn: 737 init1: 319 opt: 724 Z-score: 419.5 bits: 85.8 E(32554): 4.8e-17
Smith-Waterman score: 724; 39.2% identity (63.9% similar) in 296 aa overlap (4-284:37-322)
10 20
pF1KB6 MAGYLP-PKGYAPSPPPPYP-------VTPGYP
.:: : : : :: :: .: :
CCDS31 TAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPPPTGYPGGLPMGYYSPQQP
10 20 30 40 50 60
30 40 50 60 70 80
pF1KB6 E--PALHPGPGQAPV---PAQVPAPAPGFALFPSPGPVALGSAAPFLPLPGVPSGLEFLV
: .: : :: :.. : : . . :::. :. . : :::.::
CCDS31 STFPLYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGPT---------PMANCPPGLEYLV
70 80 90 100 110
90 100 110 120 130 140
pF1KB6 QIDQILIHQKAERVETFLGWETCNRYELRSGAGQPLGQAAEESNCCARLCCGARRPLRVR
:.:.: . :. : .: . .:: :::...... : . ..:... .: . ::. .:
CCDS31 QLDNIHVLQHFEPLEMMTCFETNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLR
120 130 140 150 160 170
150 160 170 180 190
pF1KB6 LADPGDREVLRLLRPLHCGCSC--CPCGLQEMEVQAPPGTTIGHVLQTWHPFLPKFSIQD
..: ::.. . ::..: : : :: . ::.::: :::.::: : . :. .:::.
CCDS31 VTDCMGREIMTMQRPFRCTCCCFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQN
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB6 ADRQTVLRVVGPCWTCGCGTDTNFEVKTRDESRSVGRISKQWGGLVREALTDADDFGLQF
...:.:: ::: : :::.:. ::::. : ..: : ..:.::. :..::: : ..:
CCDS31 EKKENVMRVRGPCSTYGCGSDSVFEVKSLDGISNIGSIIRKWNGLLS-AMADADHFDIHF
240 250 260 270 280 290
260 270 280 290
pF1KB6 PLDLDVRVKAVLLGATFLIDYMFFEKRGGAGPSAVTS
::::::..::...:: ::::.:.::.
CCDS31 PLDLDVKMKAMIFGACFLIDFMYFERSPPQRSR
300 310 320
295 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:37:41 2016 done: Fri Nov 4 20:37:41 2016
Total Scan time: 3.090 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]