Result of FASTA (omim) for
pF1KB6353
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6353, 266 aa
1>>>pF1KB6353 266 - 266 aa - 266 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0725+/-0.000371; mu= 16.1868+/- 0.023
mean_var=76.6657+/-15.767, 0's: 0 Z-trim(113.2): 133 B-trim: 33 in 1/54
Lambda= 0.146478
statistics sampled from 22242 (22426) to 22242 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.263), width: 16
Scan time: 6.880
The best scores are: opt bits E(85289)
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 1801 390.1 2.3e-108
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 1782 386.1 3.8e-107
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 1599 347.4 1.6e-95
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 1591 345.7 5.3e-95
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 1567 340.6 1.8e-93
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 1553 337.7 1.4e-92
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 1137 249.7 3.9e-66
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 1136 249.5 4.7e-66
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 1125 247.2 2.3e-65
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 1124 247.0 2.7e-65
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 1112 244.4 1.5e-64
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 1102 242.3 6.5e-64
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 1036 228.4 1e-59
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 960 212.3 7.4e-55
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 914 202.5 5.3e-52
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 914 202.6 5.5e-52
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 276 67.8 2.3e-11
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 276 67.9 2.7e-11
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 276 67.9 2.9e-11
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 276 67.9 2.9e-11
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 274 67.5 3.8e-11
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 268 66.1 7.4e-11
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 262 64.8 1.8e-10
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 255 63.4 6.2e-10
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 249 62.1 1.2e-09
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 243 60.8 2.9e-09
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 243 60.8 2.9e-09
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 243 60.8 2.9e-09
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 236 59.3 8.1e-09
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 236 59.4 1e-08
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 234 58.9 1e-08
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 233 58.7 1.2e-08
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 231 58.1 1.2e-08
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 234 59.0 1.3e-08
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 232 58.5 1.4e-08
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 233 58.8 1.6e-08
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 231 58.3 1.9e-08
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 229 57.8 2.1e-08
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 229 57.9 2.5e-08
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 229 57.9 2.7e-08
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 229 58.0 2.8e-08
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 229 58.0 3.1e-08
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 229 58.0 3.2e-08
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 229 58.0 3.3e-08
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 229 58.0 3.3e-08
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 229 58.0 3.4e-08
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 224 56.8 4.7e-08
NP_005507 (OMIM: 143010) HLA class I histocompatib ( 358) 225 57.1 5.2e-08
XP_016866298 (OMIM: 143010) PREDICTED: HLA class I ( 359) 225 57.1 5.2e-08
XP_016866297 (OMIM: 143010) PREDICTED: HLA class I ( 399) 225 57.2 5.6e-08
>>NP_002116 (OMIM: 604776) major histocompatibility comp (266 aa)
initn: 1801 init1: 1801 opt: 1801 Z-score: 2066.5 bits: 390.1 E(85289): 2.3e-108
Smith-Waterman score: 1801; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::::::::::::::::::::::::::
NP_002 FLGAGLFIYFKNQKGHSGLHPTGLVS
250 260
>>XP_011512864 (OMIM: 604776) PREDICTED: major histocomp (276 aa)
initn: 1782 init1: 1782 opt: 1782 Z-score: 2044.6 bits: 386.1 E(85289): 3.8e-107
Smith-Waterman score: 1782; 99.2% identity (99.2% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
:::::::::::::::::::::: : :
XP_011 FLGAGLFIYFKNQKGHSGLHPTVLSSESLKERKRSC
250 260 270
>>NP_002115 (OMIM: 126200,142857,180300,181000) major hi (266 aa)
initn: 1619 init1: 1599 opt: 1599 Z-score: 1835.8 bits: 347.4 E(85289): 1.6e-95
Smith-Waterman score: 1599; 88.7% identity (95.9% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
:::::::::: :. ::::::::::::::.:::::::: : : :::::::::::::: : .
NP_002 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
:::::..::::::::.:::::::::::::::::::.::. :::::::::::::: :::::
NP_002 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::::.:::::::..:: :::::::::::.:::::::::::: :.::::::.:::::::::
NP_002 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::::::::::.::::::::.:::..:
NP_002 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>XP_011546040 (OMIM: 126200,142857,180300,181000) PREDI (266 aa)
initn: 1610 init1: 1591 opt: 1591 Z-score: 1826.6 bits: 345.7 E(85289): 5.3e-95
Smith-Waterman score: 1591; 88.7% identity (95.5% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
:::::::::: :: ::::::::::::::::::.:::: : ::.::::::::::.::.: .
XP_011 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
::::: .:::::::::::::::::: :: ::::::.:::::. ::: :::::::::::::
XP_011 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::::.:.::::::.:: :::::::::::.::::::::::::::.::::::::::::::::
XP_011 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::: :::::::::.::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::::::::::.::::::::.:::..:
XP_011 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_001230894 (OMIM: 126200,142857,180300,181000) major (266 aa)
initn: 1587 init1: 1567 opt: 1567 Z-score: 1799.2 bits: 340.6 E(85289): 1.8e-93
Smith-Waterman score: 1567; 86.1% identity (95.9% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
::::.::::: :: :::::::::::::::::::::::. . ::::::::::::.: : .
NP_001 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
.::::..::::::::.:::::::::::::::::::.::..:. ::.:::::::: :::::
NP_001 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::::.:::::::..:: :::::::::::.::::::::::::::.::::.::::::::.::
NP_001 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_001 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::::::::::.::::::::.: :..:
NP_001 FLGAGLFIYFRNQKGHSGLQPRGFLS
250 260
>>NP_072049 (OMIM: 612735) major histocompatibility comp (266 aa)
initn: 1553 init1: 1553 opt: 1553 Z-score: 1783.2 bits: 337.7 E(85289): 1.4e-92
Smith-Waterman score: 1553; 86.8% identity (94.7% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
:::::::::: .: :::::::::: ::.:::::::::. : ::::::::::::.: : .
NP_072 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
.:::: ::::::::::::::::::: :: ::::::.::..:. ::.::::::::::::::
NP_072 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::::.:.::::::.:: :::::::::::.::::::::::::::.::::::::::::::::
NP_072 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::: :::::::.::::::::::::::::::::
NP_072 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::::::::::.::::::::.:::..:
NP_072 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_001230891 (OMIM: 123400,126200,212750,604305) HLA c (261 aa)
initn: 1137 init1: 1137 opt: 1137 Z-score: 1308.2 bits: 249.7 E(85289): 3.9e-66
Smith-Waterman score: 1137; 66.7% identity (84.1% similar) in 252 aa overlap (4-255:7-258)
10 20 30 40 50
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLH
:..::: : .:. : .::.:.: . :. :. : : :.: :::::::..
NP_001 MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGES
:.:::.:: .::::::::.:::: :: : :::::::::.:: .::::: ::::: .
NP_001 RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLI
:.:::::: ::. :.::..:.:::::::::. :::..:.::::::.::: :::::: ::
NP_001 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVL
.::::::: ::::: .:. :.::::.:::::. ::.::::::::::::::::::.:::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
190 200 210 220 230 240
240 250 260
pF1KB6 GLLFLGAGLFIYFKNQKGHSGLHPTGLVS
::.::: ::.:. ..:::
NP_001 GLIFLGLGLIIHHRSQKGLLH
250 260
>>NP_001230890 (OMIM: 123400,126200,212750,604305) HLA c (269 aa)
initn: 1172 init1: 1126 opt: 1136 Z-score: 1306.9 bits: 249.5 E(85289): 4.7e-66
Smith-Waterman score: 1136; 66.0% identity (81.3% similar) in 262 aa overlap (4-265:7-268)
10 20 30 40 50
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLH
:..:: .: .:. : .::: :: . :. :. : : :.: :::::::..
NP_001 MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGES
: :::.:: ::::::: ::::: ::::::::::::. :: :: .:: ::::: :.
NP_001 RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLI
.:::::: ::. :.::..:.:::::::::. ::::.:.::::::.::: :::::: ::
NP_001 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 QNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVL
.::::::: ::::: .:. :.::::.:::::. ::.::::::::::::::::::::::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
190 200 210 220 230 240
240 250 260
pF1KB6 GLLFLGAGLFIYFKNQKGHSGLHPTGLVS
::.::: ::.: ..::: .: :.::.
NP_001 GLIFLGLGLIIRQRSQKGPQGPPPAGLLH
250 260
>>NP_001287719 (OMIM: 615161) HLA class II histocompatib (264 aa)
initn: 1121 init1: 849 opt: 1125 Z-score: 1294.5 bits: 247.2 E(85289): 2.3e-65
Smith-Waterman score: 1125; 65.3% identity (82.4% similar) in 262 aa overlap (4-265:3-263)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
:..::: . : .:: :..::.:.: : : :: : : :.: ::::::: . : :
NP_001 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
::.:: ::::::::..::::::: . : ::. :::::..::::: ::::: . :.
NP_001 YNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::.::: ::. :.::..:.:::::::::. :::..:.::::::.::: ::::::.::.::
NP_001 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
::::: ::::: .:. :..:::::::::. ::.::::::::::::::::::.:::::::.
NP_001 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
180 190 200 210 220 230
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::: ::.: ..::: : :.::.
NP_001 FLGLGLIIRHRGQKGPRGPPPAGLLH
240 250 260
>>XP_005249108 (OMIM: 615161) PREDICTED: HLA class II hi (275 aa)
initn: 1103 init1: 831 opt: 1124 Z-score: 1293.1 bits: 247.0 E(85289): 2.7e-65
Smith-Waterman score: 1124; 65.0% identity (82.1% similar) in 263 aa overlap (4-266:3-264)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
:..::: . : .:: :..::.:.: : : :: : : :.: ::::::: . : :
XP_005 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
::.:: ::::::::..::::::: . : ::. :::::..::::: ::::: . :.
XP_005 YNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
::.::: ::. :.::..:.:::::::::. :::..:.::::::.::: ::::::.::.::
XP_005 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
::::: ::::: .:. :..:::::::::. ::.::::::::::::::::::.:::::::.
XP_005 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
180 190 200 210 220 230
250 260
pF1KB6 FLGAGLFIYFKNQKGHSGLHPTGLVS
::: ::.: ..::: : :.: .:
XP_005 FLGLGLIIRHRGQKGPRGPPPAGNISAMIQSGERAQA
240 250 260 270
266 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:35:16 2016 done: Fri Nov 4 20:35:17 2016
Total Scan time: 6.880 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]