FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6352, 293 aa
  1>>>pF1KB6352 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4035+/-0.000304; mu= 16.4210+/- 0.019
 mean_var=83.5180+/-16.415, 0's: 0 Z-trim(118.4): 3  B-trim: 592 in 1/54
 Lambda= 0.140341
 statistics sampled from 31334 (31336) to 31334 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.367), width:  16
 Scan time:  8.080

The best scores are:                                      opt bits E(85289)
NP_612423 (OMIM: 613374) SAGA-associated factor 29 ( 293) 1938 401.5 9.9e-112
XP_016878383 (OMIM: 613374) PREDICTED: SAGA-associ ( 258) 1676 348.4 8.4e-96


>>NP_612423 (OMIM: 613374) SAGA-associated factor 29 [Ho  (293 aa)
 initn: 1938 init1: 1938 opt: 1938  Z-score: 2126.9  bits: 401.5 E(85289): 9.9e-112
Smith-Waterman score: 1938; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 VSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQ
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB6 TTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK
              250       260       270       280       290   

>>XP_016878383 (OMIM: 613374) PREDICTED: SAGA-associated  (258 aa)
 initn: 1676 init1: 1676 opt: 1676  Z-score: 1840.9  bits: 348.4 E(85289): 8.4e-96
Smith-Waterman score: 1676; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KB6 MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKISPYYRTKLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLYTTAKADAEAECNILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMRRGVLM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGDEQWILAEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSYSHATNKYEVDDIDEEGKERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQ
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB6 TTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEPKKK
       :::::::::::::::                                      
XP_016 TTCFYRALIHAPPQRAPS                                   
              250                                           




293 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:34:42 2016 done: Fri Nov  4 20:34:43 2016
 Total Scan time:  8.080 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]