Result of FASTA (omim) for
pF1KB6350
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6350, 293 aa
1>>>pF1KB6350 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1156+/-0.000397; mu= 16.3095+/- 0.024
mean_var=67.2792+/-13.504, 0's: 0 Z-trim(111.4): 78 B-trim: 0 in 0/50
Lambda= 0.156363
statistics sampled from 19946 (19966) to 19946 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.234), width: 16
Scan time: 7.030
The best scores are: opt bits E(85289)
NP_055100 (OMIM: 602238) exosome complex component ( 293) 1898 437.2 1.7e-122
XP_016870047 (OMIM: 602238) PREDICTED: exosome com ( 181) 1186 276.5 2.7e-74
XP_005272233 (OMIM: 602238) PREDICTED: exosome com ( 181) 1186 276.5 2.7e-74
NP_001269638 (OMIM: 602238) exosome complex compon ( 263) 1130 264.0 2.3e-70
XP_006717086 (OMIM: 602238) PREDICTED: exosome com ( 163) 1069 250.1 2.2e-66
NP_001269637 (OMIM: 602238) exosome complex compon ( 267) 912 214.8 1.5e-55
>>NP_055100 (OMIM: 602238) exosome complex component RRP (293 aa)
initn: 1898 init1: 1898 opt: 1898 Z-score: 2320.0 bits: 437.2 E(85289): 1.7e-122
Smith-Waterman score: 1898; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB6 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
250 260 270 280 290
>>XP_016870047 (OMIM: 602238) PREDICTED: exosome complex (181 aa)
initn: 1186 init1: 1186 opt: 1186 Z-score: 1454.9 bits: 276.5 E(85289): 2.7e-74
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 181 aa overlap (113-293:1-181)
90 100 110 120 130 140
pF1KB6 IVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS
::::::::::::::::::::::::::::::
XP_016 MNLPGGELRRRSAEDELAMRGFLQEGDLIS
10 20 30
150 160 170 180 190 200
pF1KB6 AEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGF
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEA
100 110 120 130 140 150
270 280 290
pF1KB6 SLPHQIKDILKPEIMEEIVMETRQRLLEQEG
:::::::::::::::::::::::::::::::
XP_016 SLPHQIKDILKPEIMEEIVMETRQRLLEQEG
160 170 180
>>XP_005272233 (OMIM: 602238) PREDICTED: exosome complex (181 aa)
initn: 1186 init1: 1186 opt: 1186 Z-score: 1454.9 bits: 276.5 E(85289): 2.7e-74
Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 181 aa overlap (113-293:1-181)
90 100 110 120 130 140
pF1KB6 IVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLIS
::::::::::::::::::::::::::::::
XP_005 MNLPGGELRRRSAEDELAMRGFLQEGDLIS
10 20 30
150 160 170 180 190 200
pF1KB6 AEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGF
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 IWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEA
100 110 120 130 140 150
270 280 290
pF1KB6 SLPHQIKDILKPEIMEEIVMETRQRLLEQEG
:::::::::::::::::::::::::::::::
XP_005 SLPHQIKDILKPEIMEEIVMETRQRLLEQEG
160 170 180
>>NP_001269638 (OMIM: 602238) exosome complex component (263 aa)
initn: 1692 init1: 1130 opt: 1130 Z-score: 1384.3 bits: 264.0 E(85289): 2.3e-70
Smith-Waterman score: 1636; 89.8% identity (89.8% similar) in 293 aa overlap (1-293:1-263)
10 20 30 40 50 60
pF1KB6 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
::::::::::::::::::::::::::::::
NP_001 ERVNKLICVKALKTRYIGEVGDIVVGRITE------------------------------
70 80 90
130 140 150 160 170 180
pF1KB6 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
220 230 240 250 260
>>XP_006717086 (OMIM: 602238) PREDICTED: exosome complex (163 aa)
initn: 1069 init1: 1069 opt: 1069 Z-score: 1312.9 bits: 250.1 E(85289): 2.2e-66
Smith-Waterman score: 1069; 100.0% identity (100.0% similar) in 163 aa overlap (131-293:1-163)
110 120 130 140 150 160
pF1KB6 NSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRS
::::::::::::::::::::::::::::::
XP_006 MRGFLQEGDLISAEVQAVFSDGAVSLHTRS
10 20 30
170 180 190 200 210 220
pF1KB6 LKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LKYGKLGQGVLVQVSPSLVKRQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFI
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB6 ANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ANLEPVSLADREVISRLRNCIISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEI
100 110 120 130 140 150
290
pF1KB6 VMETRQRLLEQEG
:::::::::::::
XP_006 VMETRQRLLEQEG
160
>>NP_001269637 (OMIM: 602238) exosome complex component (267 aa)
initn: 908 init1: 908 opt: 912 Z-score: 1118.5 bits: 214.8 E(85289): 1.5e-55
Smith-Waterman score: 1674; 91.1% identity (91.1% similar) in 293 aa overlap (1-293:1-267)
10 20 30 40 50 60
pF1KB6 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
:::::::::::::::::::::: ::::::::::::
NP_001 RRRSAEDELAMRGFLQEGDLIS--------------------------GVLVQVSPSLVK
130 140 150
190 200 210 220 230 240
pF1KB6 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
220 230 240 250 260
293 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:34:07 2016 done: Fri Nov 4 20:34:08 2016
Total Scan time: 7.030 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]