FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6350, 293 aa
  1>>>pF1KB6350 293 - 293 aa - 293 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4554+/-0.000904; mu= 14.0612+/- 0.054
 mean_var=57.9984+/-11.358, 0's: 0 Z-trim(104.6): 26  B-trim: 4 in 1/49
 Lambda= 0.168409
 statistics sampled from 7983 (7998) to 7983 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.246), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS6935.1 EXOSC2 gene_id:23404|Hs108|chr9         ( 293) 1898 469.4 1.3e-132
CCDS65161.1 EXOSC2 gene_id:23404|Hs108|chr9        ( 263) 1130 282.8 1.8e-76
CCDS65160.1 EXOSC2 gene_id:23404|Hs108|chr9        ( 267)  912 229.9 1.6e-60


>>CCDS6935.1 EXOSC2 gene_id:23404|Hs108|chr9              (293 aa)
 initn: 1898 init1: 1898 opt: 1898  Z-score: 2494.0  bits: 469.4 E(32554): 1.3e-132
Smith-Waterman score: 1898; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB6 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB6 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
              250       260       270       280       290   

>>CCDS65161.1 EXOSC2 gene_id:23404|Hs108|chr9             (263 aa)
 initn: 1692 init1: 1130 opt: 1130  Z-score: 1486.3  bits: 282.8 E(32554): 1.8e-76
Smith-Waterman score: 1636; 89.8% identity (89.8% similar) in 293 aa overlap (1-293:1-263)

               10        20        30        40        50        60
pF1KB6 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
       ::::::::::::::::::::::::::::::                              
CCDS65 ERVNKLICVKALKTRYIGEVGDIVVGRITE------------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB6 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
              100       110       120       130       140       150

              190       200       210       220       230       240
pF1KB6 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
              160       170       180       190       200       210

              250       260       270       280       290   
pF1KB6 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
              220       230       240       250       260   

>>CCDS65160.1 EXOSC2 gene_id:23404|Hs108|chr9             (267 aa)
 initn: 908 init1: 908 opt: 912  Z-score: 1200.0  bits: 229.9 E(32554): 1.6e-60
Smith-Waterman score: 1674; 91.1% identity (91.1% similar) in 293 aa overlap (1-293:1-267)

               10        20        30        40        50        60
pF1KB6 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAMEMRLPVARKPLSERLGRDTKKHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 ERVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVK
       ::::::::::::::::::::::                          ::::::::::::
CCDS65 RRRSAEDELAMRGFLQEGDLIS--------------------------GVLVQVSPSLVK
              130       140                                 150    

              190       200       210       220       230       240
pF1KB6 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RQKTHFHDLPCGASVILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISRLRNC
          160       170       180       190       200       210    

              250       260       270       280       290   
pF1KB6 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 IISLVTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETRQRLLEQEG
          220       230       240       250       260       




293 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:34:06 2016 done: Fri Nov  4 20:34:06 2016
 Total Scan time:  2.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]