Result of FASTA (omim) for
pF1KB6347
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6347, 266 aa
1>>>pF1KB6347 266 - 266 aa - 266 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2396+/-0.000386; mu= 15.5924+/- 0.024
mean_var=86.5053+/-17.884, 0's: 0 Z-trim(113.9): 128 B-trim: 68 in 1/54
Lambda= 0.137896
statistics sampled from 23327 (23478) to 23327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.275), width: 16
Scan time: 7.180
The best scores are: opt bits E(85289)
NP_072049 (OMIM: 612735) major histocompatibility ( 266) 1734 354.8 9.1e-98
NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 1679 343.9 1.8e-94
XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 1640 336.1 3.9e-92
NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 1607 329.6 3.7e-90
NP_002116 (OMIM: 604776) major histocompatibility ( 266) 1541 316.5 3.3e-86
XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 1526 313.5 2.7e-85
NP_001230890 (OMIM: 123400,126200,212750,604305) H ( 269) 1104 229.5 4.9e-60
NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 1100 228.7 8.5e-60
XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 1097 228.1 1.3e-59
NP_001230891 (OMIM: 123400,126200,212750,604305) H ( 261) 1089 226.5 3.8e-59
NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 1079 224.5 1.5e-58
XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 1076 223.9 2.3e-58
NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 1041 217.0 2.8e-56
NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 947 198.3 1.3e-50
NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 896 188.1 1.2e-47
XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 890 186.9 2.8e-47
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 289 67.4 3e-11
NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 286 66.8 4.7e-11
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 283 66.3 8.6e-11
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 271 63.8 3.7e-10
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 271 63.9 4.4e-10
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 271 63.9 4.6e-10
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 271 63.9 4.6e-10
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 269 63.5 5.9e-10
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 252 60.1 5.6e-09
NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 242 58.0 2e-08
NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 241 57.8 2.3e-08
NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 241 57.8 2.3e-08
NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 241 57.8 2.3e-08
NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 239 57.5 3.4e-08
NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 234 56.4 6e-08
NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 231 55.8 8.9e-08
NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 231 55.8 9.1e-08
NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 230 55.6 1e-07
NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 228 55.1 1e-07
NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 231 55.9 1.1e-07
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 230 55.8 1.4e-07
XP_016866307 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 226 54.8 1.8e-07
XP_016866306 (OMIM: 142871,600807) PREDICTED: HLA ( 246) 226 54.8 1.8e-07
NP_005505 (OMIM: 106300,142830,608579) major histo ( 362) 228 55.4 1.8e-07
NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 224 54.4 2.4e-07
NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 221 53.8 3.6e-07
NP_001229687 (OMIM: 142800,608579) HLA class I his ( 365) 221 54.0 4.7e-07
XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 218 53.1 4.7e-07
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 219 53.5 5.8e-07
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 219 53.6 5.9e-07
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 214 52.4 8.7e-07
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 215 52.8 1e-06
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 214 52.5 1.1e-06
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 214 52.6 1.2e-06
>>NP_072049 (OMIM: 612735) major histocompatibility comp (266 aa)
initn: 1734 init1: 1734 opt: 1734 Z-score: 1876.2 bits: 354.8 E(85289): 9.1e-98
Smith-Waterman score: 1734; 96.6% identity (98.9% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
::::::::::::::::::::::::::::::::::::::: ::::::::::::::.:.:::
NP_072 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
::::::.:::::::::::::::::::::::::::::::::::.::::::::::: :::::
NP_072 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::::::::::::::::::::::::::::::::::::::::::::::::.::::::::.::
NP_072 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
NP_072 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::::::::
NP_072 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_001230894 (OMIM: 126200,142857,180300,181000) major (266 aa)
initn: 1679 init1: 1679 opt: 1679 Z-score: 1817.1 bits: 343.9 E(85289): 1.8e-94
Smith-Waterman score: 1679; 92.9% identity (96.6% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
::::.::::: .:.:::::::::: ::.:::::::::: :::::::::::::.:.:::
NP_001 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
::::: :::::::::.::::::::: :: :::::::::::::.:::::::::::::::::
NP_001 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::::::.:::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::: ::::
NP_001 FLGAGLFIYFRNQKGHSGLQPRGFLS
250 260
>>XP_011546040 (OMIM: 126200,142857,180300,181000) PREDI (266 aa)
initn: 1640 init1: 1640 opt: 1640 Z-score: 1775.1 bits: 336.1 E(85289): 3.9e-92
Smith-Waterman score: 1640; 91.4% identity (96.2% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
:::::::::: .:::::::::::: ::.::::.:::: : .::::::::::.:::: :
XP_011 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
.::::::::::::::::::::::::::::::::::.::..:::::. ::::::: :::::
XP_011 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::::::.:::::::::::::::::::::::::::::::::::::::::.::::::::.::
XP_011 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::::::::
XP_011 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_002115 (OMIM: 126200,142857,180300,181000) major hi (266 aa)
initn: 1607 init1: 1607 opt: 1607 Z-score: 1739.6 bits: 329.6 E(85289): 3.7e-90
Smith-Waterman score: 1607; 89.5% identity (95.5% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
:::::::::: ..::::::::::: ::..:::::::: : ::::::::::::::.:::
NP_002 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
.:::: :::::::::.::::::::: :: ::::::.::: :. ::.::::::::::::::
NP_002 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::::.:.:::::.:::::::::::::::::::::::::::: ::::::.:.::::::.::
NP_002 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::::::::::::::::::
NP_002 FLGAGLFIYFRNQKGHSGLQPTGFLS
250 260
>>NP_002116 (OMIM: 604776) major histocompatibility comp (266 aa)
initn: 1562 init1: 1541 opt: 1541 Z-score: 1668.7 bits: 316.5 E(85289): 3.3e-86
Smith-Waterman score: 1541; 86.1% identity (95.1% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
:::::::::: .: :::::::::: ::.:::::::::. : ::::::::::::::.: .
NP_002 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
.:::: .:::::::::::::::::: :: ::::::.::..:. ::.:::::::: :::::
NP_002 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::::.:.::::::.:: :::::::::::.::::::::::::::.::::.::::::::.::
NP_002 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_002 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::.::::::::.:::..:
NP_002 FLGAGLFIYFKNQKGHSGLHPTGLVS
250 260
>>XP_011512864 (OMIM: 604776) PREDICTED: major histocomp (276 aa)
initn: 1526 init1: 1526 opt: 1526 Z-score: 1652.3 bits: 313.5 E(85289): 2.7e-85
Smith-Waterman score: 1526; 86.6% identity (95.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
:::::::::: .: :::::::::: ::.:::::::::. : ::::::::::::::.: .
XP_011 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
.:::: .:::::::::::::::::: :: ::::::.::..:. ::.:::::::: :::::
XP_011 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::::.:.::::::.:: :::::::::::.::::::::::::::.::::.::::::::.::
XP_011 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
XP_011 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
190 200 210 220 230 240
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::::::::::.::::::::.::
XP_011 FLGAGLFIYFKNQKGHSGLHPTVLSSESLKERKRSC
250 260 270
>>NP_001230890 (OMIM: 123400,126200,212750,604305) HLA c (269 aa)
initn: 1095 init1: 1075 opt: 1104 Z-score: 1198.8 bits: 229.5 E(85289): 4.9e-60
Smith-Waterman score: 1104; 62.6% identity (82.4% similar) in 262 aa overlap (4-265:7-268)
10 20 30 40 50
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLE
:..:: .:..:. : .::: :: . :. :. .:. :.: :::::::..
NP_001 MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RYFHNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVES
::..:.::..::::::: ::::: ::: :: :::::..:: :...:. ::::: :.
NP_001 RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLI
.::::.: ::. :..:. :.:::::::::. ::::.:.:::::: ::: .::::: ::
NP_001 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 HNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVL
.::::::: ::::: .:. :.::::.:::::. ::.::::::.:::::::::::::::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
190 200 210 220 230 240
240 250 260
pF1KB6 GLLFLGAGLFIYFRNQKGHSGLQPTGFLS
::.::: ::.: :.::: .: :.:.:
NP_001 GLIFLGLGLIIRQRSQKGPQGPPPAGLLH
250 260
>>NP_001287719 (OMIM: 615161) HLA class II histocompatib (264 aa)
initn: 1065 init1: 804 opt: 1100 Z-score: 1194.6 bits: 228.7 E(85289): 8.5e-60
Smith-Waterman score: 1100; 62.6% identity (82.8% similar) in 262 aa overlap (4-265:3-263)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
:..::: ::.:: :..::. .: : : :: .:. :.: ::::::: . ::.
NP_001 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
.:.::. ::::::::..::::::: . :.::. ::.:::.:. ::. ::::: . :.
NP_001 YNREEYGRFDSDVGEFQAVTELGRSI-EDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::.:.: ::. :..:. :.:::::::::. :::..:.:::::: ::: .:::::.::.::
NP_001 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::: ::::: .:. :..:::::::::. ::.::::::.:::::::::::.:::::::.
NP_001 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
180 190 200 210 220 230
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::: ::.: :.::: : :.:.:
NP_001 FLGLGLIIRHRGQKGPRGPPPAGLLH
240 250 260
>>XP_005249108 (OMIM: 615161) PREDICTED: HLA class II hi (275 aa)
initn: 1065 init1: 804 opt: 1097 Z-score: 1191.1 bits: 228.1 E(85289): 1.3e-59
Smith-Waterman score: 1097; 62.4% identity (82.5% similar) in 263 aa overlap (4-266:3-264)
10 20 30 40 50 60
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERYF
:..::: ::.:: :..::. .: : : :: .:. :.: ::::::: . ::.
XP_005 MALQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYI
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 HNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVESFTV
.:.::. ::::::::..::::::: . :.::. ::.:::.:. ::. ::::: . :.
XP_005 YNREEYGRFDSDVGEFQAVTELGRSI-EDWNNYKDFLEQERAAVDKVCRHNYEAELRTTL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG
::.:.: ::. :..:. :.:::::::::. :::..:.:::::: ::: .:::::.::.::
XP_005 QRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTSLIRNG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL
::::: ::::: .:. :..:::::::::. ::.::::::.:::::::::::.:::::::.
XP_005 DWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLI
180 190 200 210 220 230
250 260
pF1KB6 FLGAGLFIYFRNQKGHSGLQPTGFLS
::: ::.: :.::: : :.: .:
XP_005 FLGLGLIIRHRGQKGPRGPPPAGNISAMIQSGERAQA
240 250 260 270
>>NP_001230891 (OMIM: 123400,126200,212750,604305) HLA c (261 aa)
initn: 1089 init1: 1089 opt: 1089 Z-score: 1182.8 bits: 226.5 E(85289): 3.8e-59
Smith-Waterman score: 1089; 63.5% identity (83.7% similar) in 252 aa overlap (4-255:7-258)
10 20 30 40 50
pF1KB6 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLE
:..::: :..:. : .::. .: . :. :. .:. :.: :::::::..
NP_001 MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RYFHNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGQVDNYCRHNYGVVES
: ..:.::.:::::::::.:::: :: :.:: ::::::.::.::. :: ::::: .
NP_001 RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 FTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLI
:.::::.: ::. :..:. :.:::::::::. :::..:.:::::: ::: .::::: ::
NP_001 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 HNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVL
.::::::: ::::: .:. :.::::.:::::. ::.::::::.:::::::::::.:::::
NP_001 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL
190 200 210 220 230 240
240 250 260
pF1KB6 GLLFLGAGLFIYFRNQKGHSGLQPTGFLS
::.::: ::.:. :.:::
NP_001 GLIFLGLGLIIHHRSQKGLLH
250 260
266 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:52:20 2016 done: Fri Nov 4 18:52:21 2016
Total Scan time: 7.180 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]