Result of FASTA (ccds) for
pF1KB6342
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6342, 291 aa
1>>>pF1KB6342 291 - 291 aa - 291 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2979+/-0.000762; mu= 6.8180+/- 0.046
mean_var=128.0021+/-24.917, 0's: 0 Z-trim(112.6): 27 B-trim: 0 in 0/54
Lambda= 0.113362
statistics sampled from 13305 (13331) to 13305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.41), width: 16
Scan time: 2.660
The best scores are: opt bits E(32554)
CCDS12072.1 MBD3 gene_id:53615|Hs108|chr19 ( 291) 1956 330.5 8.9e-91
CCDS62481.1 MBD3 gene_id:53615|Hs108|chr19 ( 259) 1685 286.2 1.8e-77
CCDS11953.1 MBD2 gene_id:8932|Hs108|chr18 ( 411) 1329 228.0 8.8e-60
CCDS12209.1 MBD3L1 gene_id:85509|Hs108|chr19 ( 194) 496 91.6 4.8e-19
CCDS45871.1 MBD2 gene_id:8932|Hs108|chr18 ( 302) 440 82.6 4e-16
>>CCDS12072.1 MBD3 gene_id:53615|Hs108|chr19 (291 aa)
initn: 1956 init1: 1956 opt: 1956 Z-score: 1743.2 bits: 330.5 E(32554): 8.9e-91
Smith-Waterman score: 1956; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB6 MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 NKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 IASALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IASALHTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLE
190 200 210 220 230 240
250 260 270 280 290
pF1KB6 EALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV
250 260 270 280 290
>>CCDS62481.1 MBD3 gene_id:53615|Hs108|chr19 (259 aa)
initn: 1685 init1: 1685 opt: 1685 Z-score: 1504.4 bits: 286.2 E(32554): 1.8e-77
Smith-Waterman score: 1685; 100.0% identity (100.0% similar) in 255 aa overlap (37-291:5-259)
10 20 30 40 50 60
pF1KB6 ECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRT
::::::::::::::::::::::::::::::
CCDS62 MERKSPSGKKFRSKPQLARYLGGSMDLSTFDFRT
10 20 30
70 80 90 100 110 120
pF1KB6 GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKVKSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKVKSD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 PQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASALH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALMAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALMAD
160 170 180 190 200 210
250 260 270 280 290
pF1KB6 MLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV
:::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEEPDPDPEMEHV
220 230 240 250
>>CCDS11953.1 MBD2 gene_id:8932|Hs108|chr18 (411 aa)
initn: 1356 init1: 1328 opt: 1329 Z-score: 1186.8 bits: 228.0 E(32554): 8.8e-60
Smith-Waterman score: 1329; 76.0% identity (92.5% similar) in 254 aa overlap (4-254:148-401)
10 20 30
pF1KB6 MERKRWECPALPQGWEREEVPRRSGLSAGHRDV
:: .::::: ::..::: :.::::::. ::
CCDS11 GGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDV
120 130 140 150 160 170
40 50 60 70 80 90
pF1KB6 FYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKP
.:.::::::::::::::::::...:::.::::::::. ::..:..::.: : :: ::::
CCDS11 YYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGKP
180 190 200 210 220 230
100 110 120 130 140 150
pF1KB6 DLNTALPVRQTASIFKQPVTKITNHPSNKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAE
::::.::.:::::::::::::.:::::::::::::. .:::::::::.:.::.: :..:
CCDS11 DLNTTLPIRQTASIFKQPVTKVTNHPSNKVKSDPQRMNEQPRQLFWEKRLQGLSASDVTE
240 250 260 270 280 290
160 170 180 190 200 210
pF1KB6 ELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSAAVEKNPGVWLNTTQP
...:::.::::::::::: .:::::::.:::::::. :::::.::::::::.:::::.::
CCDS11 QIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSAAVEKNPAVWLNTSQP
300 310 320 330 340 350
220 230 240 250 260 270
pF1KB6 LCKAFMVTDEDIRKQEELVQQVRKRLEEALMADML---AHVEELARDGEAPLDKACAEDD
:::::.::::::::::: ::::::.::::::::.: : .::.
CCDS11 LCKAFIVTDEDIRKQEERVQQVRKKLEEALMADILSRAADTEEMDIEMDSGDEA
360 370 380 390 400 410
280 290
pF1KB6 DEEDEEEEEEEPDPDPEMEHV
>>CCDS12209.1 MBD3L1 gene_id:85509|Hs108|chr19 (194 aa)
initn: 449 init1: 190 opt: 496 Z-score: 455.4 bits: 91.6 E(32554): 4.8e-19
Smith-Waterman score: 496; 44.6% identity (71.5% similar) in 193 aa overlap (74-264:1-193)
50 60 70 80 90 100
pF1KB6 RSKPQLARYLGGSMDLSTFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQ
: :: :: . : :: :.:: :.:..:.:.
CCDS12 MAKSSQRKQRDCVNQCKSKPGLSTSIPLRM
10 20 30
110 120 130 140 150 160
pF1KB6 TASIFKQPVTKITNHPSNKVKSDP-QKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLP
.. ::.:::.:: ::.:.:. ......:.:. :...:.::.:.. : :: .:.::
CCDS12 SSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQVCWQRRLQGLQAYSSAGELSSTLDLA
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB6 KGLQGVGPGCTDETLLSAIASAL-HTSTMPITGQLSAAVEKNPGVWLNTTQPLCKAFMVT
. :: . :. : .:: .::.: :. :: . : ::: :. .. .: ::: :.::
CCDS12 NTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACSSDAVEIIPAEGVGISQLLCKQFLVT
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB6 DEDIRKQEELVQQVRKRLEEALMADMLAHVEELARDGEAPLDKACAEDDDEEDEEEEEEE
.::::::: :. ::.:: ::.:: ::. : .:: :. .:
CCDS12 EEDIRKQEGKVKTVRERLAIALIADGLANEAEKVRDQEGRPEKR
160 170 180 190
290
pF1KB6 PDPDPEMEHV
>>CCDS45871.1 MBD2 gene_id:8932|Hs108|chr18 (302 aa)
initn: 440 init1: 440 opt: 440 Z-score: 403.0 bits: 82.6 E(32554): 4e-16
Smith-Waterman score: 440; 63.9% identity (84.5% similar) in 97 aa overlap (4-100:148-244)
10 20 30
pF1KB6 MERKRWECPALPQGWEREEVPRRSGLSAGHRDV
:: .::::: ::..::: :.::::::. ::
CCDS45 GGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDV
120 130 140 150 160 170
40 50 60 70 80 90
pF1KB6 FYYSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLMSKMNKSRQRVRYDSSNQVKGKP
.:.::::::::::::::::::...:::.::::::::. ::..:..::.: : :: : .
CCDS45 YYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKLRW
180 190 200 210 220 230
100 110 120 130 140 150
pF1KB6 DLNTALPVRQTASIFKQPVTKITNHPSNKVKSDPQKAVDQPRQLFWEKKLSGLNAFDIAE
. . :
CCDS45 NTHRPAPWHALSRLCLLIRCLLCLECAYPLPLHLVNSYSSKTQLHCLHLWEACPAYSRQN
240 250 260 270 280 290
291 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:55:23 2016 done: Fri Nov 4 18:55:24 2016
Total Scan time: 2.660 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]