FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6335, 261 aa
  1>>>pF1KB6335 261 - 261 aa - 261 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0885+/-0.000454; mu= 16.1265+/- 0.028
 mean_var=73.1194+/-14.754, 0's: 0 Z-trim(109.5): 3  B-trim: 1038 in 1/52
 Lambda= 0.149989
 statistics sampled from 17728 (17730) to 17728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.57), E-opt: 0.2 (0.208), width:  16
 Scan time:  6.610

The best scores are:                                      opt bits E(85289)
NP_872590 (OMIM: 176740,615919) proliferating cell ( 261) 1669 370.7 1.5e-102
NP_002583 (OMIM: 176740,615919) proliferating cell ( 261) 1669 370.7 1.5e-102


>>NP_872590 (OMIM: 176740,615919) proliferating cell nuc  (261 aa)
 initn: 1669 init1: 1669 opt: 1669  Z-score: 1962.1  bits: 370.7 E(85289): 1.5e-102
Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB6 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
              190       200       210       220       230       240

              250       260 
pF1KB6 IADMGHLKYYLAPKIEDEEGS
       :::::::::::::::::::::
NP_872 IADMGHLKYYLAPKIEDEEGS
              250       260 

>>NP_002583 (OMIM: 176740,615919) proliferating cell nuc  (261 aa)
 initn: 1669 init1: 1669 opt: 1669  Z-score: 1962.1  bits: 370.7 E(85289): 1.5e-102
Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB6 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
              190       200       210       220       230       240

              250       260 
pF1KB6 IADMGHLKYYLAPKIEDEEGS
       :::::::::::::::::::::
NP_002 IADMGHLKYYLAPKIEDEEGS
              250       260 




261 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:45:00 2016 done: Fri Nov  4 22:45:01 2016
 Total Scan time:  6.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]