FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6335, 261 aa
  1>>>pF1KB6335 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6557+/-0.00109; mu= 12.2228+/- 0.065
 mean_var=61.8037+/-12.250, 0's: 0 Z-trim(102.3): 20  B-trim: 0 in 0/50
 Lambda= 0.163142
 statistics sampled from 6875 (6877) to 6875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.211), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS13087.1 PCNA gene_id:5111|Hs108|chr20          ( 261) 1669 401.7 2.7e-112


>>CCDS13087.1 PCNA gene_id:5111|Hs108|chr20               (261 aa)
 initn: 1669 init1: 1669 opt: 1669  Z-score: 2129.5  bits: 401.7 E(32554): 2.7e-112
Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB6 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYK
              190       200       210       220       230       240

              250       260 
pF1KB6 IADMGHLKYYLAPKIEDEEGS
       :::::::::::::::::::::
CCDS13 IADMGHLKYYLAPKIEDEEGS
              250       260 




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:44:59 2016 done: Fri Nov  4 22:45:00 2016
 Total Scan time:  2.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]