Result of FASTA (omim) for
pF1KB6332
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6332, 288 aa
1>>>pF1KB6332 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2245+/-0.000381; mu= 15.6351+/- 0.023
mean_var=67.3145+/-13.461, 0's: 0 Z-trim(112.1): 6 B-trim: 0 in 0/57
Lambda= 0.156322
statistics sampled from 20849 (20855) to 20849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.245), width: 16
Scan time: 7.230
The best scores are: opt bits E(85289)
XP_005270085 (OMIM: 612189) PREDICTED: phenazine b ( 288) 1911 440.0 2.5e-123
NP_071412 (OMIM: 612189) phenazine biosynthesis-li ( 288) 1911 440.0 2.5e-123
NP_001028255 (OMIM: 612189) phenazine biosynthesis ( 280) 1666 384.7 1.1e-106
XP_011538362 (OMIM: 612189) PREDICTED: phenazine b ( 273) 1525 352.9 3.9e-97
XP_016872002 (OMIM: 612189) PREDICTED: phenazine b ( 273) 1525 352.9 3.9e-97
XP_016872003 (OMIM: 612189) PREDICTED: phenazine b ( 185) 939 220.7 1.7e-57
>>XP_005270085 (OMIM: 612189) PREDICTED: phenazine biosy (288 aa)
initn: 1911 init1: 1911 opt: 1911 Z-score: 2335.1 bits: 440.0 E(85289): 2.5e-123
Smith-Waterman score: 1911; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
190 200 210 220 230 240
250 260 270 280
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
250 260 270 280
>>NP_071412 (OMIM: 612189) phenazine biosynthesis-like d (288 aa)
initn: 1911 init1: 1911 opt: 1911 Z-score: 2335.1 bits: 440.0 E(85289): 2.5e-123
Smith-Waterman score: 1911; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
190 200 210 220 230 240
250 260 270 280
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
250 260 270 280
>>NP_001028255 (OMIM: 612189) phenazine biosynthesis-lik (280 aa)
initn: 1666 init1: 1666 opt: 1666 Z-score: 2036.6 bits: 384.7 E(85289): 1.1e-106
Smith-Waterman score: 1666; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)
10 20 30 40 50 60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
190 200 210 220 230 240
250 260 270 280
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
:::::::::::
NP_001 WSQHLGKKEMHGRTALYQFLFYLPNSKLVFLLICTIPLKM
250 260 270 280
>>XP_011538362 (OMIM: 612189) PREDICTED: phenazine biosy (273 aa)
initn: 1525 init1: 1525 opt: 1525 Z-score: 1864.9 bits: 352.9 E(85289): 3.9e-97
Smith-Waterman score: 1525; 97.5% identity (99.6% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
::::::::::::::::::::::::::::::::::::::::::::::::::... ..
XP_011 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTATGPSIWGRK
190 200 210 220 230 240
250 260 270 280
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
XP_011 KCMLFSVPTEEESWEFPFVQTEGLTLEEVQLLF
250 260 270
>>XP_016872002 (OMIM: 612189) PREDICTED: phenazine biosy (273 aa)
initn: 1525 init1: 1525 opt: 1525 Z-score: 1864.9 bits: 352.9 E(85289): 3.9e-97
Smith-Waterman score: 1525; 97.5% identity (99.6% similar) in 236 aa overlap (1-236:1-236)
10 20 30 40 50 60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
::::::::::::::::::::::::::::::::::::::::::::::::::... ..
XP_016 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTATGPSIWGRK
190 200 210 220 230 240
250 260 270 280
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
XP_016 KCMLFSVPTEEESWEFPFVQTEGLTLEEVQLLF
250 260 270
>>XP_016872003 (OMIM: 612189) PREDICTED: phenazine biosy (185 aa)
initn: 959 init1: 939 opt: 939 Z-score: 1153.2 bits: 220.7 E(85289): 1.7e-57
Smith-Waterman score: 939; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
:::::::::::::::::::::
XP_016 LDLPLYPAHPQDFHEVEDLIKGIKDLAQGMSLRSFWSVSTDCHRQHTGPGHLLFSRYPKA
130 140 150 160 170 180
288 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:06:00 2016 done: Fri Nov 4 19:06:01 2016
Total Scan time: 7.230 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]