FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6332, 288 aa
  1>>>pF1KB6332 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0139+/-0.000854; mu= 10.6979+/- 0.051
 mean_var=60.8785+/-12.457, 0's: 0 Z-trim(105.5): 14  B-trim: 83 in 1/49
 Lambda= 0.164377
 statistics sampled from 8465 (8467) to 8465 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.26), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS7277.2 PBLD gene_id:64081|Hs108|chr10          ( 288) 1911 461.7 2.8e-130
CCDS44413.1 PBLD gene_id:64081|Hs108|chr10         ( 280) 1666 403.6 8.5e-113


>>CCDS7277.2 PBLD gene_id:64081|Hs108|chr10               (288 aa)
 initn: 1911 init1: 1911 opt: 1911  Z-score: 2452.4  bits: 461.7 E(32554): 2.8e-130
Smith-Waterman score: 1911; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
              190       200       210       220       230       240

              250       260       270       280        
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
              250       260       270       280        

>>CCDS44413.1 PBLD gene_id:64081|Hs108|chr10              (280 aa)
 initn: 1666 init1: 1666 opt: 1666  Z-score: 2138.6  bits: 403.6 E(32554): 8.5e-113
Smith-Waterman score: 1666; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KB6 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MKLPIFIADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QSSCFGLRWFTPASEVPLCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDGIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSY
              190       200       210       220       230       240

              250       260       270       280        
pF1KB6 WSQHLGKKEMHAFQCSHRGGELGISLRPDGRVDIRGGAAVVLEGTLTA
       :::::::::::                                     
CCDS44 WSQHLGKKEMHGRTALYQFLFYLPNSKLVFLLICTIPLKM        
              250       260       270       280        




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:05:59 2016 done: Fri Nov  4 19:06:00 2016
 Total Scan time:  2.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]