FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6331, 261 aa
  1>>>pF1KB6331 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1462+/-0.000687; mu= 11.4692+/- 0.041
 mean_var=90.4449+/-18.727, 0's: 0 Z-trim(112.1): 15  B-trim: 695 in 1/52
 Lambda= 0.134860
 statistics sampled from 12923 (12935) to 12923 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.397), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS1238.1 C1orf111 gene_id:284680|Hs108|chr1      ( 261) 1799 359.4 1.5e-99


>>CCDS1238.1 C1orf111 gene_id:284680|Hs108|chr1           (261 aa)
 initn: 1799 init1: 1799 opt: 1799  Z-score: 1900.8  bits: 359.4 E(32554): 1.5e-99
Smith-Waterman score: 1799; 99.6% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB6 MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VRQGIQNTVLSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQ
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VRQGIQNTALSPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QDEGKWDNCLSEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QDEGKWDNCLSEDMAENICSSSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKALWSKEQKARLGDRLSSGSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NGYKCVACCRMYPTLDFLKSHIKRGFREGFSCKVYYRKLKALWSKEQKARLGDRLSSGSC
              190       200       210       220       230       240

              250       260 
pF1KB6 QAFNSPAEHLRQIGGEAYLCL
       :::::::::::::::::::::
CCDS12 QAFNSPAEHLRQIGGEAYLCL
              250       260 




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:31:54 2016 done: Fri Nov  4 20:31:55 2016
 Total Scan time:  2.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]