FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6330, 288 aa
  1>>>pF1KB6330 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3336+/-0.000766; mu= 15.9661+/- 0.046
 mean_var=76.0901+/-15.157, 0's: 0 Z-trim(109.1): 16  B-trim: 5 in 1/50
 Lambda= 0.147031
 statistics sampled from 10672 (10680) to 10672 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.328), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS11450.1 IFI35 gene_id:3430|Hs108|chr17         ( 288) 1893 410.5 7.1e-115
CCDS82134.1 IFI35 gene_id:3430|Hs108|chr17         ( 286) 1867 405.0 3.2e-113
CCDS2192.1 NMI gene_id:9111|Hs108|chr2             ( 307)  392 92.2 5.2e-19


>>CCDS11450.1 IFI35 gene_id:3430|Hs108|chr17              (288 aa)
 initn: 1893 init1: 1893 opt: 1893  Z-score: 2175.9  bits: 410.5 E(32554): 7.1e-115
Smith-Waterman score: 1893; 99.7% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VTTIQVMMSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
              190       200       210       220       230       240

              250       260       270       280        
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
              250       260       270       280        

>>CCDS82134.1 IFI35 gene_id:3430|Hs108|chr17              (286 aa)
 initn: 1069 init1: 1069 opt: 1867  Z-score: 2146.1  bits: 405.0 E(32554): 3.2e-113
Smith-Waterman score: 1867; 99.0% identity (99.3% similar) in 288 aa overlap (1-288:1-286)

               10        20        30        40        50        60
pF1KB6 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSAPLDAALHALQEEQARLKMRLWDLQQLRKELGDSPKDKVPFSVPKIPLVFRGHTQQDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQQKEHTINMEECRLRVQVQPLELPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
       :::::.  ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VTTIQM--SSQLSGRRVLVTGFPASLRLSEEELLDKLEIFFGKTRNGGGDVDVRELLPGS
                130       140       150       160       170        

              190       200       210       220       230       240
pF1KB6 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRVSPYVNGEIQKAEIRSQPVPRSVLVLNI
      180       190       200       210       220       230        

              250       260       270       280        
pF1KB6 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PDILDGPELHDVLEIHFQKPTRGGGEVEALTVVPQGQQGLAVFTSESG
      240       250       260       270       280      

>>CCDS2192.1 NMI gene_id:9111|Hs108|chr2                  (307 aa)
 initn: 244 init1: 117 opt: 392  Z-score: 454.8  bits: 92.2 E(32554): 5.2e-19
Smith-Waterman score: 392; 29.0% identity (64.5% similar) in 290 aa overlap (6-283:23-305)

                                10        20         30         40 
pF1KB6                  MSAPLDAALHALQEEQARLKMRLW-DLQQLRKELGDSPKD-KV
                             :   ..: .: .. ...:  ..:.:. :: .. :. ..
CCDS21 MEADKDDTQQILKEHSPDEFIKDEQNKGLIDEITKKNIQLKKEIQKLETELQEATKEFQI
               10        20        30        40        50        60

              50             60        70        80        90      
pF1KB6 PFSVPKIPLVFRG-----HTQQDPEVPKSLVSNLRIHCPLLAGSALITFDDPKVAEQVLQ
         ..:.  . : .     . .:  ..  :.  . ..   .  :.:::::.  .::..:..
CCDS21 KEDIPETKMKFLSVETPENDSQLSNISCSFQVSSKVPYEIQKGQALITFEKEEVAQNVVS
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KB6 QKEHTINMEECRLRVQVQPLELPMVTTIQVMVSSQLSGRRVLVTGFPASLRLSEEELLDK
       ...: .....  :.: ..:  .:. . .. .:  ..:  .. :: .: .::  :... ::
CCDS21 MSKHHVQIKDVNLEVTAKP--VPLNSGVRFQVYVEVSKMKINVTEIPDTLR--EDQMRDK
              130         140       150       160         170      

        160       170         180       190       200       210    
pF1KB6 LEIFFGKTRNGGGDVDVREL--LPGSVMLGFARDGVAQRLCQIGQFTVPLGGQQVPLRV-
       ::. :.:.:::::.::  .     ::... :.. :::... .  ..  ::  .:.  :: 
CCDS21 LELSFSKSRNGGGEVDRVDYDRQSGSAVITFVEIGVADKILKKKEY--PLYINQTCHRVT
        180       190       200       210       220         230    

            220       230       240        250       260       270 
pF1KB6 -SPYVNGEIQKAEIRSQPVPRSVLVLNIPDI-LDGPELHDVLEIHFQKPTRGGGEVEALT
        :::.. ...: .: :    :.::. ..  : .:   ..:...::::.   :::::... 
CCDS21 VSPYTEIHLKKYQIFSGTSKRTVLLTGMEGIQMDEEIVEDLINIHFQRAKNGGGEVDVVK
          240       250       260       270       280       290    

             280        
pF1KB6 VVPQGQQGLAVFTSESG
           ::  .: :     
CCDS21 C-SLGQPHIAYFEE   
           300          




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:31:25 2016 done: Fri Nov  4 20:31:26 2016
 Total Scan time:  2.690 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]